RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SEL1L2Q5TEA6 688 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 PCNX4Q63HM2 1172 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 DENND2CQ68D51 928 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 YTHDF3Q7Z739 585 aaKnown RBP12.7□□□□□ -0.38
CD44-209ENST00000433892 ZNF564Q8TBZ8 553 aaPredicted RBP12.7□□□□□ -0.38
CD44-209ENST00000433892 GMLQ99445 158 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 NUP85Q9BW27 656 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 RAVER2Q9HCJ3 691 aaKnown RBP12.7□□□□□ -0.38
CD44-209ENST00000433892 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.7□□□□□ -0.38
CD44-209ENST00000433892 H0YHG0 523 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 SPOPO43791 374 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 TBC1D12O60347 775 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 ATP9AO75110 1047 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 ASNSP08243 561 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 MYCLP12524 364 aaPredicted RBP12.69□□□□□ -0.38
CD44-209ENST00000433892 GZMAP12544 262 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 HSPA6P17066 643 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 FNTAP49354 379 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 XKR9Q5GH70 373 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 SPDYCQ5MJ68 293 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 NSMFQ6X4W1 530 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 NIPA1Q7RTP0 329 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 HOOK3Q86VS8 718 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 PRPF38AQ8NAV1 312 aaKnown RBP12.69□□□□□ -0.38
CD44-209ENST00000433892 UHMK1Q8TAS1 419 aaKnown RBP12.69□□□□□ -0.38
CD44-209ENST00000433892 SYTL5Q8TDW5 730 aaPredicted RBP12.69□□□□□ -0.38
CD44-209ENST00000433892 CD101Q93033 1021 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 TLCD1Q96CP7 247 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 TAAR1Q96RJ0 339 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 SEMA4AQ9H3S1 761 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 ZNF277Q9NRM2 450 aaPredicted RBP12.69□□□□□ -0.38
CD44-209ENST00000433892 TOPORSQ9NS56 1045 aaPredicted RBP12.69□□□□□ -0.38
CD44-209ENST00000433892 PCYOX1Q9UHG3 505 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 LOXHD1Q8IVV2 1947 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 PHF20L1A8MW92 1017 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 FSBPO95073 299 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 LYPLA2O95372 231 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 PAEPP09466 180 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 NUDT17P0C025 328 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 KCNJ1P48048 391 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 MFAP3P55082 362 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 NCKAP1LP55160 1127 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 MKRN4PQ13434 485 aaPredicted RBP12.69□□□□□ -0.38
CD44-209ENST00000433892 C6orf89Q6UWU4 347 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 MCF2L2Q86YR7 1114 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 CCDC105Q8IYK2 499 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 LARGE2Q8N3Y3 721 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 SHC3Q92529 594 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 ZNF653Q96CK0 615 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 WNT8AQ9H1J5 351 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 ST6GALNAC4Q9H4F1 302 aa12.69□□□□□ -0.38
CD44-209ENST00000433892 PODXLO00592 558 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 MAPK13O15264 365 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 MTA2O94776 668 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 CCNE2O96020 404 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 CYP11B1P15538 503 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 CNGA1P29973 690 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 HNRNPH1P31943 449 aaKnown RBP12.68□□□□□ -0.38
CD44-209ENST00000433892 RPS6P62753 249 aaKnown RBP12.68□□□□□ -0.38
CD44-209ENST00000433892 CHADLQ6NUI6 762 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 MMS22LQ6ZRQ5 1243 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 PARD3BQ8TEW8 1205 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 DHX38Q92620 1227 aaKnown RBP12.68□□□□□ -0.38
CD44-209ENST00000433892 IWS1Q96ST2 819 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 TBC1D22BQ9NU19 505 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 TCEAL9Q9UHQ7 104 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 GGA2Q9UJY4 613 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 TBX20Q9UMR3 447 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 PCDHA3Q9Y5H8 950 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 CALCAP01258 141 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 CYP1A2P05177 515 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 RARAP10276 462 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 FGFR4P22455 802 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 NPTX2P47972 431 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 SOX10P56693 466 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 BYSLQ13895 437 aaKnown RBP12.68□□□□□ -0.38
CD44-209ENST00000433892 ICE2Q659A1 982 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 KRT39Q6A163 491 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 KCNV1Q6PIU1 500 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 SLC13A5Q86YT5 568 aaPredicted RBP12.68□□□□□ -0.38
CD44-209ENST00000433892 C4orf19Q8IY42 314 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 TMEM161BQ8NDZ6 487 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 HELQQ8TDG4 1101 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 TAS1R2Q8TE23 839 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 SEC16BQ96JE7 1060 aa12.68□□□□□ -0.38
CD44-209ENST00000433892 DENND3A2RUS2 1198 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 PMM2O15305 246 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 GGPS1O95749 300 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 COILP38432 576 aaPredicted RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 PDE6CP51160 858 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 PSMC5P62195 406 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 IFI35P80217 286 aaPredicted RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 CDR2Q01850 454 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 PGM5Q15124 567 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 NBPF9Q3BBW0 867 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 CPLX4Q7Z7G2 160 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 CNPY4Q8N129 248 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 C3orf20Q8ND61 904 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 MORC4Q8TE76 937 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 CABS1Q96KC9 395 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms