RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 KDM4CQ9H3R0 1056 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 NOCTQ9UK39 431 aaKnown RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 GTF3C4Q9UKN8 822 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 PNMA2Q9UL42 364 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 PCDHA3Q9Y5H8 950 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 ZHX2Q9Y6X8 837 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 MYH11P35749 1972 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 PASKQ96RG2 1323 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 TMEM110-MUSTN1A8MSY1 372 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 SGPL1O95470 568 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 CHRNB2P17787 502 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 COILP38432 576 aaPredicted RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 RPL21P46778 160 aaKnown RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 QARSP47897 775 aaKnown RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 RASA3Q14644 834 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 HAUS6Q7Z4H7 955 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 MCF2L2Q86YR7 1114 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 AKT1S1Q96B36 256 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 HVCN1Q96D96 273 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 PCDHB18PQ96TA0 734 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 CBWD1Q9BRT8 395 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 ROPN1BQ9BZX4 212 aaPredicted RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 TMEM117Q9H0C3 514 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 ROPN1Q9HAT0 212 aaPredicted RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 A1CFQ9NQ94 594 aaKnown RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 KCNH7Q9NS40 1196 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 TRPC6Q9Y210 931 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 TTC36A6NLP5 189 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 ASAP2O43150 1006 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 TBC1D12O60347 775 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 CTNND1O60716 968 aaKnown RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 RASSF9O75901 435 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 SHBGP04278 402 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 ITGB5P18084 799 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 NCKAP1LP55160 1127 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 RWDD2BP57060 319 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 SLC29A2Q14542 456 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 ZKSCAN8Q15776 578 aaPredicted RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 ANKRD20A8PQ5CZ79 823 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 KRT27Q7Z3Y8 459 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 NOP9Q86U38 636 aaKnown RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 CCDC105Q8IYK2 499 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 SAMD3Q8N6K7 520 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 ZNF564Q8TBZ8 553 aaPredicted RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 MAIP1Q8WWC4 291 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 SHC3Q92529 594 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 KIFAP3Q92845 792 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 ART4Q93070 314 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 CNKSR1Q969H4 720 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 CCDC134Q9H6E4 229 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 TBC1D22BQ9NU19 505 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 TCP10L2B9ZVM9 353 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 DDX39AO00148 427 aaKnown RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 DHX15O43143 795 aaKnown RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 SPOPO43791 374 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 ICAM1P05362 532 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 PYGMP11217 842 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 CHN1P15882 459 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 GHRHRQ02643 423 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 AOC3Q16853 763 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 KRT39Q6A163 491 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 AADACL2Q6P093 401 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 TTC27Q6P3X3 843 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 TRMT10CQ7L0Y3 403 aaKnown RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 MAEAQ7L5Y9 396 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 TAOK1Q7L7X3 1001 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 USP37Q86T82 979 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 CCDC50Q8IVM0 306 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 ANKS4BQ8N8V4 417 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 CCDC197Q8NCU1 140 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 SLCO2A1Q92959 643 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 NUP85Q9BW27 656 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 OSBPL7Q9BZF2 842 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 AZI2Q9H6S1 392 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 LRRC19Q9H756 370 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 AGO4Q9HCK5 861 aaKnown RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 KLC4Q9NSK0 619 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 MAP3K20Q9NYL2 800 aaKnown RBP12.13□□□□□ -0.47
USP4-205ENST00000431357 COQ4Q9Y3A0 265 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 UBIAD1Q9Y5Z9 338 aa12.13□□□□□ -0.47
USP4-205ENST00000431357 TLDC2A0PJX2 215 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 CCDC189A1A4V9 331 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 SPDYE2BA6NHP3 402 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 PHF20L1A8MW92 1017 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 RIPK2O43353 540 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 MMEP08473 750 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 SPDYE6P0CI01 402 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 GTF2H1P32780 548 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 MAN1A1P33908 653 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 PTGER2P43116 358 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 MARCKSL1P49006 195 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 PDE6CP51160 858 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 GPC3P51654 580 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 FMO1Q01740 532 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 CDR2Q01850 454 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 ENPEPQ07075 957 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 CALCOCO2Q13137 446 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 ITIH4Q14624 930 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 TNFAIP8L3Q5GJ75 292 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 PCNX4Q63HM2 1172 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms