RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 GASTP01350 101 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 EDNRBP24530 442 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 PTPN7P35236 360 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 SREBF1P36956 1147 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 WASP42768 502 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 IL10RAQ13651 578 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 RRP12Q5JTH9 1297 aaKnown RBP5.41□□□□□ -1.54
USP40-204ENST00000427947 WDR75Q8IWA0 830 aaKnown RBP5.41□□□□□ -1.54
USP40-204ENST00000427947 PQLC1Q8N2U9 271 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 REPS2Q8NFH8 660 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 IL17RAQ96F46 866 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 C20orf173Q96LM9 149 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 LRGUKQ96M69 825 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 PDCD2LQ9BRP1 358 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 LDAHQ9H6V9 325 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 PLA2G3Q9NZ20 509 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 PCDHA13Q9Y5I0 950 aa5.41□□□□□ -1.54
USP40-204ENST00000427947 KRTAP9-6A0A140TA67 174 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 FOXS1O43638 330 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 DTNBO60941 627 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 RAD17O75943 681 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 STC2O76061 302 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 CYP2C19P33261 490 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 MSX2P35548 267 aaPredicted RBP5.4□□□□□ -1.54
USP40-204ENST00000427947 SLC6A9P48067 706 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 GZMKP49863 264 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 CTSWP56202 376 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 APBA1Q02410 837 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 FAM214AQ32MH5 1076 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 FBLN7Q53RD9 439 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 PRAMEF14Q5SWL7 426 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 IFIT1BQ5T764 474 aaKnown RBP5.4□□□□□ -1.54
USP40-204ENST00000427947 FAM111BQ6SJ93 734 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 PDZD4Q76G19 769 aaPredicted RBP5.4□□□□□ -1.54
USP40-204ENST00000427947 TRMT2AQ8IZ69 625 aaKnown RBP5.4□□□□□ -1.54
USP40-204ENST00000427947 CCHCR1Q8TD31 782 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 KAT5Q92993 513 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 RAB24Q969Q5 203 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 SSBP3Q9BWW4 388 aaPredicted RBP5.4□□□□□ -1.54
USP40-204ENST00000427947 SENP6Q9GZR1 1112 aaPredicted RBP5.4□□□□□ -1.54
USP40-204ENST00000427947 ENKD1Q9H0I2 346 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 LANCL2Q9NS86 450 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 SIK3Q9Y2K2 1263 aa5.4□□□□□ -1.54
USP40-204ENST00000427947 ZMYM3Q14202 1370 aa5.4□□□□□ -1.55
USP40-204ENST00000427947 PRPF3O43395 683 aaKnown RBP5.39□□□□□ -1.55
USP40-204ENST00000427947 OFD1O75665 1012 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 POU2F2P09086 479 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 PDCP20941 246 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 AKAP5P24588 427 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 FXR1P51114 621 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP40-204ENST00000427947 FKBP15Q5T1M5 1219 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 FAM102BQ5T8I3 360 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 USP45Q70EL2 814 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 MYO1HQ8N1T3 1032 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 ZNF512Q96ME7 567 aaPredicted RBP5.39□□□□□ -1.55
USP40-204ENST00000427947 AIFM3Q96NN9 605 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 RBM15Q96T37 977 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP40-204ENST00000427947 GTPBP4Q9BZE4 634 aaKnown RBP5.39□□□□□ -1.55
USP40-204ENST00000427947 MANSC1Q9H8J5 431 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 TDP1Q9NUW8 608 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 CHPF2Q9P2E5 772 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 AJAP1Q9UKB5 411 aaPredicted RBP5.39□□□□□ -1.55
USP40-204ENST00000427947 SLC30A1Q9Y6M5 507 aa5.39□□□□□ -1.55
USP40-204ENST00000427947 PATE3B3GLJ2 98 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 HOXA3O43365 443 aaPredicted RBP5.38□□□□□ -1.55
USP40-204ENST00000427947 MARCH6O60337 910 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 GPR32O75388 356 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 ITGB3P05106 788 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 GUCY1A2P33402 732 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 PLP2Q04941 152 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 FOXL1Q12952 345 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 MRPL49Q13405 166 aaKnown RBP5.38□□□□□ -1.55
USP40-204ENST00000427947 ZNF267Q14586 743 aaPredicted RBP5.38□□□□□ -1.55
USP40-204ENST00000427947 MLC1Q15049 377 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 ELAVL1Q15717 326 aaKnown RBP5.38□□□□□ -1.55
USP40-204ENST00000427947 NXNQ6DKJ4 435 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 PPP4R3AQ6IN85 833 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 CXorf57Q6NSI4 855 aaKnown RBP5.38□□□□□ -1.55
USP40-204ENST00000427947 LILRA6Q6PI73 481 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 POLNQ7Z5Q5 900 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 RSPH3Q86UC2 560 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 TCEAL8Q8IYN2 117 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 D2HGDHQ8N465 521 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 MAGEB6Q8N7X4 407 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 STON2Q8WXE9 905 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 CLIP3Q96DZ5 547 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 CYFIP2Q96F07 1278 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 CEP95Q96GE4 821 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 NMRK2Q9NPI5 230 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 TMEM140Q9NV12 185 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 RAPGEFL1Q9UHV5 662 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 SH3BP1Q9Y3L3 701 aa5.38□□□□□ -1.55
USP40-204ENST00000427947 MYBBP1AQ9BQG0 1328 aaKnown RBP5.38□□□□□ -1.55
USP40-204ENST00000427947 WNT10BO00744 389 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 AP1G1O43747 822 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 RPLP2P05387 115 aaKnown RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 U2AF1L5P0DN76 240 aaPredicted RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 IL2RBP14784 551 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 HSPA6P17066 643 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 SYN1P17600 705 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms