RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PDE5AO76074 875 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 FDPSP14324 419 aaKnown RBP10.48□□□□□ -0.73
USP54-205ENST00000424265 ADARP55265 1226 aaKnown RBP10.48□□□□□ -0.73
USP54-205ENST00000424265 XKR9Q5GH70 373 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 ZNF384Q8TF68 577 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 IFT81Q8WYA0 676 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 PPP2R3CQ969Q6 453 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 A0A087WWV3 80 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 IGKV6D-41A0A0C4DH26 115 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 EIF3FO00303 357 aaPredicted RBP10.48□□□□□ -0.73
USP54-205ENST00000424265 GUCY2DQ02846 1103 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 HERC4Q5GLZ8 1057 aaPredicted RBP10.48□□□□□ -0.73
USP54-205ENST00000424265 RNF220Q5VTB9 566 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 RESP18Q5W5W9 173 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 DNAJC9Q8WXX5 260 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 C12orf42Q96LP6 360 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 SELENOSQ9BQE4 189 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 CPVLQ9H3G5 476 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 SERTAD1Q9UHV2 236 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 SSX2IPQ9Y2D8 614 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 SNHG28P0DPA3 235 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 PCYT1AP49585 367 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 RGMBQ6NW40 437 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 CATSPERGQ6ZRH7 1159 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 NIPA1Q7RTP0 329 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 VSTM4Q8IW00 320 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 SHCBP1Q8NEM2 672 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 KIAA1468Q9P260 1216 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 GRIN2DO15399 1336 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 A6NHS1 94 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 TIMM44O43615 452 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 OPHN1O60890 802 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 EPB41P11171 864 aaKnown RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 NOGQ13253 232 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 EPHA7Q15375 998 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 METTL16Q86W50 562 aaKnown RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 SLC7A3Q8WY07 619 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 NUDT12Q9BQG2 462 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 PIDD1Q9HB75 910 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 TUFT1Q9NNX1 390 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 HSPA8P11142 646 aaKnown RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 OXCT1P55809 520 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 HERVK_113P62684 666 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 NSUN2Q08J23 767 aaKnown RBP eCLIP10.47□□□□□ -0.73
USP54-205ENST00000424265 PAK1Q13153 545 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 RCN2Q14257 317 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 CCDC153Q494R4 210 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 ODR4Q5SWX8 454 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 ST13P4Q8IZP2 240 aaPredicted RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 FAM133AQ8N9E0 248 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 LENG1Q96BZ8 264 aaPredicted RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 TRPV5Q9NQA5 729 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 P4HBP07237 508 aaKnown RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 RGS2P41220 211 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 SNAP25P60880 206 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 IGBP1P78318 339 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 RIPK1Q13546 671 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 BAATQ14032 418 aaPredicted RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 HSP90AA4PQ58FG1 418 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 IFT20Q8IY31 132 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 ECT2Q9H8V3 914 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 TNRC6CQ9HCJ0 1690 aaKnown RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 CCT8L1PA6NM43 557 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 VWA5AO00534 786 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 GSTA1P08263 222 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 GUCY1A2P33402 732 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 PLEKHH3Q7Z736 793 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 FAM228AQ86W67 206 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 MYCT1Q8N699 235 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 NOA1Q8NC60 698 aaKnown RBP10.47□□□□□ -0.73
USP54-205ENST00000424265 IMPG2Q9BZV3 1241 aa10.47□□□□□ -0.73
USP54-205ENST00000424265 MAST2Q6P0Q8 1798 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 RBM43Q6ZSC3 357 aaKnown RBP10.46□□□□□ -0.73
USP54-205ENST00000424265 MAEAQ7L5Y9 396 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 MCPH1Q8NEM0 835 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 OXER1Q8TDS5 423 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 WNK4Q96J92 1243 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 CNGB3Q9NQW8 809 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 SLC45A1Q9Y2W3 748 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 ACTN4O43707 911 aaKnown RBP10.46□□□□□ -0.73
USP54-205ENST00000424265 NR3C2P08235 984 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 NQO1P15559 274 aaKnown RBP10.46□□□□□ -0.73
USP54-205ENST00000424265 YBX3P16989 372 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP54-205ENST00000424265 SREBF1P36956 1147 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 EMBQ6PCB8 327 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 DEPTORQ8TB45 409 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 SOCS4Q8WXH5 440 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 CCSER1Q9C0I3 900 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 SPATC1LQ9H0A9 340 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 SLC38A10Q9HBR0 1119 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 PALMDQ9NP74 551 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 DISC1Q9NRI5 854 aa10.46□□□□□ -0.73
USP54-205ENST00000424265 CCDC169A6NNP5 214 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 POLGP54098 1239 aaPredicted RBP10.46□□□□□ -0.74
USP54-205ENST00000424265 DMP1Q13316 513 aaPredicted RBP10.46□□□□□ -0.74
USP54-205ENST00000424265 RIOX2Q8IUF8 465 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 HINFPQ9BQA5 517 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 KIAA1024Q9UPX6 916 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 MAGEA13PA6NCF6 341 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 TMEM88BA6NKF7 163 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms