RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MAP3K13O43283 966 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CTIFO43310 598 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 TBC1D4O60343 1298 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 H2AFYO75367 372 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 TOMM70O94826 608 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CASP14P31944 242 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CYP2C19P33261 490 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 FAM83BQ5T0W9 1011 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 RARS2Q5T160 578 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 KCTD16Q68DU8 428 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 TRIM8Q9BZR9 551 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 VPS11Q9H270 941 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 TMEM245Q9H330 911 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 INTUQ9ULD6 942 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 VPS9D1Q9Y2B5 631 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CLIC4Q9Y696 253 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 A8MXQ7 604 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ECE2O60344 883 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 DARSP14868 501 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 PCYT1AP49585 367 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 KCNQ4P56696 695 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 LRRC74AQ0VAA2 488 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 KCNH2Q12809 1159 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 INPP5AQ14642 412 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SLC39A14Q15043 492 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 RNF180Q86T96 592 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 BBS7Q8IWZ6 715 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 EXD1Q8NHP7 514 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 COG1Q8WTW3 980 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CATSPERBQ9H7T0 1116 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 NSMCE4AQ9NXX6 385 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CACNA2D2Q9NY47 1150 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 AKAP7Q9P0M2 348 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 MAP10Q9P2G4 905 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 PPARGC1AQ9UBK2 798 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 PCDHA7Q9UN72 937 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L15C9J2P7 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L13C9JLJ4 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L11C9JVI0 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L18D6R9N7 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L22D6RA61 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L17D6RBQ6 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L19D6RCP7 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L20D6RJB6 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 KIAA0391O15091 583 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ACSL3O95573 720 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ACADMP11310 421 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 QARSP47897 775 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ZBED6P86452 979 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L24Q0WX57 530 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ZMYM1Q5SVZ6 1142 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 MTHFD1LQ6UB35 978 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 WNT8AQ9H1J5 351 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 UVRAGQ9P2Y5 699 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 HERC5Q9UII4 1024 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 A0A0D9SFI3 127 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ANGPT2O15123 496 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CCDC159P0C7I6 412 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SLFN14P0C7P3 912 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SCRN1Q12765 414 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 STILQ15468 1287 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SNX30Q5VWJ9 437 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 DIS3LQ8TF46 1054 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CLIC6Q96NY7 704 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SLC9A2Q9UBY0 812 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 RASA4BC9J798 803 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 RASA4O43374 803 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 TADA3O75528 432 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 CTTNQ14247 550 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ANO5Q75V66 913 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SYNE4Q8N205 404 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ZNF512Q96ME7 567 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SIK2Q9H0K1 926 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ABCC4O15439 1325 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SRGAP2O75044 1071 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ERN1O75460 977 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 STAG3L1P0CL83 205 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 P3H1Q32P28 736 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 ATPAF2Q8N5M1 289 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 SMYD3Q9H7B4 428 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 PKP3Q9Y446 797 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 PSMD14O00487 310 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 WDR47O94967 919 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 CYP2E1P05181 493 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 RPLP2P05387 115 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 VAMP7P51809 220 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 TRIP13Q15645 432 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 UGP2Q16851 508 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 TRIM71Q2Q1W2 868 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 SEPT12Q8IYM1 358 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 FOXP3Q9BZS1 431 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 REREQ9P2R6 1566 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 CACNA1FO60840 1977 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 BMP10O95393 424 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 S100A5P33763 92 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 KRT20P35900 424 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ZNF157P51786 506 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 RBL2Q08999 1139 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ZNF544Q6NX49 715 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PRUNE1Q86TP1 453 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms