RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TNFSF13BQ9Y275 285 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.65■□□□□ 0.582e-7■■■□□ 19.1
CCDC28B-202ENST00000421922 GRIN2DO15399 1336 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 A0A0B4J269 797 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 A0A1W2PQC6 194 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 B4GALT5O43286 388 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 N4BP1O75113 896 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 CSDE1O75534 798 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 CTSHP09668 335 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 VAMP7P51809 220 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 GSDMDP57764 484 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 CETN1Q12798 172 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 TRIM14Q14142 442 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 SNX17Q15036 470 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 CBWD2Q8IUF1 395 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 PIAS4Q8N2W9 510 aaPredicted RBP18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 MMRN2Q9H8L6 949 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 CDY2AQ9Y6F7 541 aa18.64■□□□□ 0.57
CCDC28B-202ENST00000421922 ITIH6Q6UXX5 1313 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 ARVCFO00192 962 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 OGTO15294 1046 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 TSPAN1O60635 241 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 MCL1Q07820 350 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 SYCP1Q15431 976 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 PTPN21Q16825 1174 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 CCDC155Q8N6L0 562 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 ARMC5Q96C12 935 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 CPB2Q96IY4 423 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 FBXL18Q96ME1 805 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 FNBP1Q96RU3 617 aa18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 TRMT13Q9NUP7 481 aaKnown RBP18.63■□□□□ 0.57
CCDC28B-202ENST00000421922 NRDCO43847 1150 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 ADRB2P07550 413 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 TRIM49P0CI25 452 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 TRIM49CP0CI26 452 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 MCF2P10911 925 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 ARF4P18085 180 aaPredicted RBP18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 FGFR4P22455 802 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 AXLP30530 894 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 ACOT2P49753 483 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 CYP24A1Q07973 514 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 AMHR2Q16671 573 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 KYAT1Q16773 422 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 DCAF4L1Q3SXM0 396 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 NOTUMQ6P988 496 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 RPAINQ86UA6 219 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 CCDC150Q8NCX0 1101 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 U2AF1L4Q8WU68 220 aaKnown RBP18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 SLC35C1Q96A29 364 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 CCDC127Q96BQ5 260 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 BORCS6Q96GS4 357 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 PDZD7Q9H5P4 517 aa18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 RBAKQ9NYW8 714 aaPredicted RBP18.62■□□□□ 0.57
CCDC28B-202ENST00000421922 MROH7Q68CQ1 1323 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 TTLL13PA6NNM8 815 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 TLR3O15455 904 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 CAND2O75155 1236 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 SGPL1O95470 568 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 IQCF3P0C7M6 154 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 TRIM21P19474 475 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 PROZP22891 400 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 MYL7Q01449 175 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 CCDC186Q7Z3E2 898 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 THNSL1Q8IYQ7 743 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 ZSWIM2Q8NEG5 633 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 TMC2Q8TDI7 906 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 IQCDQ96DY2 449 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 ERGIC2Q96RQ1 377 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 NUP58Q9BVL2 599 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 TRIM6Q9C030 488 aaPredicted RBP18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 CDT1Q9H211 546 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 CDHR5Q9HBB8 845 aa18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 PIN4Q9Y237 131 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-202ENST00000421922 RPS6KA5O75582 802 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 DLATP10515 647 aaKnown RBP18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 PBX1P40424 430 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 ENPEPQ07075 957 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 SURF1Q15526 300 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 EEF1DP3Q658K8 133 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 GBP6Q6ZN66 633 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 CDR2LQ86X02 465 aaPredicted RBP18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 SLC43A3Q8NBI5 491 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 NEK11Q8NG66 645 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 MFSD14AQ96MC6 490 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 TMEM106CQ9BVX2 250 aa18.6■□□□□ 0.57
CCDC28B-202ENST00000421922 B4GALT4O60513 344 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 FMO5P49326 533 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 PSMD6Q15008 389 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 EXOC3L4Q17RC7 722 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 SLC27A1Q6PCB7 646 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 FAM212AQ96EL1 285 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 CCDC51Q96ER9 411 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 LSM14BQ9BX40 385 aaKnown RBP18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 SENP6Q9GZR1 1112 aaPredicted RBP18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 HAPLN2Q9GZV7 340 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 TRPV6Q9H1D0 765 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 RPF1Q9H9Y2 349 aaKnown RBP18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 PTPRHQ9HD43 1115 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 AGPAT5Q9NUQ2 364 aa18.59■□□□□ 0.57
CCDC28B-202ENST00000421922 HTTP42858 3142 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms