RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MED7O43513 233 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 ZNF862O60290 1169 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 MYBL1P10243 752 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 MCF2P10911 925 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 AKR1A1P14550 325 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 Q3C1V9 767 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 ATF7IP2Q5U623 682 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 UBL4BQ8N7F7 174 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 FAM212AQ96EL1 285 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 FAXDC2Q96IV6 333 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 MAML3Q96JK9 1138 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 MS4A4AQ96JQ5 239 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 FAM124BQ9H5Z6 455 aaPredicted RBP9.06□□□□□ -0.96
USP54-203ENST00000418501 TUT1Q9H6E5 874 aaKnown RBP9.06□□□□□ -0.96
USP54-203ENST00000418501 TXNRD2Q9NNW7 524 aa9.06□□□□□ -0.96
USP54-203ENST00000418501 WRAP73Q9P2S5 460 aaPredicted RBP9.06□□□□□ -0.96
USP54-203ENST00000418501 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP54-203ENST00000418501 GOLGA8IPA6NC78 632 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TMEM88BA6NKF7 163 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 GOLGA8JA6NMD2 632 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CLTAP09496 248 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 GLRA2P23416 452 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CASP4P49662 377 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 NAB2Q15742 525 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TMCO3Q6UWJ1 677 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 RASAL3Q86YV0 1011 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 WDR49Q8IV35 697 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 DAW1Q8N136 415 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 NME8Q8N427 588 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 GLIS3Q8NEA6 775 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 NFKBIZQ9BYH8 718 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CPA4Q9UI42 421 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 RBBP6Q7Z6E9 1792 aaKnown RBP9.05□□□□□ -0.96
USP54-203ENST00000418501 NRCAMQ92823 1304 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TLR2O60603 784 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 RGS20O76081 388 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CHMP4BP1P59074 171 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TNNC1P63316 161 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 RPS6KA1Q15418 735 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CFAP221Q4G0U5 840 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 FAM43BQ6ZT52 329 aaPredicted RBP9.05□□□□□ -0.96
USP54-203ENST00000418501 TMEM139Q8IV31 216 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 SLC35F6Q8N357 371 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 GPR161Q8N6U8 529 aaKnown RBP9.05□□□□□ -0.96
USP54-203ENST00000418501 MAIP1Q8WWC4 291 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CBWD1Q9BRT8 395 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 A0A0A6YYK5 440 aaPredicted RBP9.05□□□□□ -0.96
USP54-203ENST00000418501 DYNC1LI2O43237 492 aaPredicted RBP9.05□□□□□ -0.96
USP54-203ENST00000418501 MYL3P08590 195 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TRIM49P0CI25 452 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TRIM49CP0CI26 452 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 GCNT1Q02742 428 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 SGSM1Q2NKQ1 1148 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 C7orf31Q8N865 590 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 AFG1LQ8WV93 481 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 SAAL1Q96ER3 474 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 PBKQ96KB5 322 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 GANQ9H2C0 597 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 AMFRQ9UKV5 643 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 ARHGEF37A1IGU5 675 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 BTNL10A8MVZ5 291 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TMCO5BA8MYB1 307 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 PJA2O43164 708 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 SLC9A1P19634 815 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 POLR2BP30876 1174 aaKnown RBP9.05□□□□□ -0.96
USP54-203ENST00000418501 MYO1EQ12965 1108 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 PTPN21Q16825 1174 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 TEX35Q5T0J7 233 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CCDC62Q6P9F0 684 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 PARD3BQ8TEW8 1205 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 RUBCNQ92622 972 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 CHP1Q99653 195 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 POLD4Q9HCU8 107 aa9.05□□□□□ -0.96
USP54-203ENST00000418501 SLC10A3P09131 477 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 INSRRP14616 1297 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 MAP2K1Q02750 393 aaPredicted RBP9.04□□□□□ -0.96
USP54-203ENST00000418501 IFNL1Q8IU54 200 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 RABGGTAQ92696 567 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 TNFSF13BQ9Y275 285 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 FHOD1Q9Y613 1164 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 LCA5LO95447 670 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 PRLRP16471 622 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 KLRC1P26715 233 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 KCNMA1Q12791 1236 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 TARBP2Q15633 366 aaKnown RBP9.04□□□□□ -0.96
USP54-203ENST00000418501 CATSPER4Q7RTX7 472 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 BRSK2Q8IWQ3 736 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 BAP1Q92560 729 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 L2HGDHQ9H9P8 463 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 PDLIM7Q9NR12 457 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 RNF216Q9NWF9 866 aaPredicted RBP9.04□□□□□ -0.96
USP54-203ENST00000418501 TLL2Q9Y6L7 1015 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 USP27XA6NNY8 438 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 CA12O43570 354 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 GNRH1P01148 92 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 HSPA6P17066 643 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 GJA5P36382 358 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 TAF2Q6P1X5 1199 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 ASAP3Q8TDY4 903 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 FBXL18Q96ME1 805 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms