RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 FAM111BQ6SJ93 734 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 Q6ZVL8 140 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 PDZD4Q76G19 769 aaPredicted RBP3.45□□□□□ -1.86
VPS41-206ENST00000418457 MIGA2Q7L4E1 593 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 RAVER1Q8IY67 606 aaKnown RBP3.45□□□□□ -1.86
VPS41-206ENST00000418457 FUKQ8N0W3 1084 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 OR7D4Q8NG98 312 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 CXorf38Q8TB03 319 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 JPH3Q8WXH2 748 aaPredicted RBP3.45□□□□□ -1.86
VPS41-206ENST00000418457 DPF2Q92785 391 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 HDAC10Q969S8 669 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 COA7Q96BR5 231 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 IL17RAQ96F46 866 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 CAMKK2Q96RR4 588 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 RBM15Q96T37 977 aaKnown RBP eCLIP3.45□□□□□ -1.86
VPS41-206ENST00000418457 C7orf25Q9BPX7 421 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 SSBP3Q9BWW4 388 aaPredicted RBP3.45□□□□□ -1.86
VPS41-206ENST00000418457 RTFDC1Q9BY42 306 aaPredicted RBP3.45□□□□□ -1.86
VPS41-206ENST00000418457 RHOBTB2Q9BYZ6 727 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 ENKD1Q9H0I2 346 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 CDH19Q9H159 772 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 EPC1Q9H2F5 836 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 BCO1Q9HAY6 547 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 PLA2G3Q9NZ20 509 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 TRPS1Q9UHF7 1281 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 ANKRD6Q9Y2G4 727 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 SLC30A1Q9Y6M5 507 aa3.45□□□□□ -1.86
VPS41-206ENST00000418457 ERICH3Q5RHP9 1530 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 CCDC154A6NI56 674 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 K7ESM1 405 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 HTRA2O43464 458 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 FOXS1O43638 330 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 MSX2P35548 267 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 APBA1Q02410 837 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 FOXL1Q12952 345 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 MRPL49Q13405 166 aaKnown RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 SEPT2Q15019 361 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 PPP2R5AQ15172 486 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 NFE2Q16621 373 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 FKBP15Q5T1M5 1219 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 LCE3BQ5TA77 95 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 MFSD5Q6N075 450 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 POLNQ7Z5Q5 900 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 RHOT1Q8IXI2 618 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 PQLC1Q8N2U9 271 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 D2HGDHQ8N465 521 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 LILRA3Q8N6C8 439 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 OR2I1PQ8NGU4 316 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.44□□□□□ -1.86
VPS41-206ENST00000418457 MDM1Q8TC05 714 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 HOXB13Q92826 284 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 RELTQ969Z4 430 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 LOXL4Q96JB6 756 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 MPHOSPH9Q99550 1183 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 NUP88Q99567 741 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 SENP6Q9GZR1 1112 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 MANSC1Q9H8J5 431 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 LANCL2Q9NS86 450 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 SERPINB13Q9UIV8 391 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 CNOT11Q9UKZ1 510 aaKnown RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 PNMA8BQ9ULN7 279 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 ARID1BQ8NFD5 2236 aaPredicted RBP3.44□□□□□ -1.86
VPS41-206ENST00000418457 SOGA1O94964 1423 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 CLIP1P30622 1438 aa3.44□□□□□ -1.86
VPS41-206ENST00000418457 CUX2O14529 1486 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 PATE3B3GLJ2 98 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 ADCY6O43306 1168 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 DTNBO60941 627 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 ZNF623O75123 536 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 RFPL1O75677 317 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 STC2O76061 302 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 SCGB1D2O95969 90 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 RPLP2P05387 115 aaKnown RBP3.43□□□□□ -1.86
VPS41-206ENST00000418457 COMTP21964 271 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 EDNRBP24530 442 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 AKAP5P24588 427 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 CYP2C19P33261 490 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 PTPN7P35236 360 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 SREBF1P36956 1147 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 HHEXQ03014 270 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 ICAM4Q14773 271 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 FAM214AQ32MH5 1076 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 C3orf36Q3SXR2 165 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 HS1BP3Q53T59 392 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 RRP12Q5JTH9 1297 aaKnown RBP3.43□□□□□ -1.86
VPS41-206ENST00000418457 PRAMEF14Q5SWL7 426 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 PPP4R3AQ6IN85 833 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 CHPFQ8IZ52 775 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 TRMT2AQ8IZ69 625 aaKnown RBP3.43□□□□□ -1.86
VPS41-206ENST00000418457 CHST13Q8NET6 341 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 REPS2Q8NFH8 660 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 DNERQ8NFT8 737 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 Q8TCH9 128 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 CCHCR1Q8TD31 782 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 CYFIP2Q96F07 1278 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 ZNF512Q96ME7 567 aaPredicted RBP3.43□□□□□ -1.86
VPS41-206ENST00000418457 SAMD11Q96NU1 681 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 PDCD2LQ9BRP1 358 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 TMEM140Q9NV12 185 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 LIMCH1Q9UPQ0 1083 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms