RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 ABLIM1O14639 778 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 PPP1R37O75864 691 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 GCNT3O95395 438 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 MYBP10242 640 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 HARSP12081 509 aaKnown RBP13.69□□□□□ -0.22
SKA1-203ENST00000417656 CTNNB1P35222 781 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 MLH1P40692 756 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 ERVK-21P61565 698 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 GTF2BQ00403 316 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 KRBA2Q6ZNG9 492 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 ZBTB33Q86T24 672 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 MAP4K3Q8IVH8 894 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 HACE1Q8IYU2 909 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 TMEM87AQ8NBN3 555 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 CNNM3Q8NE01 707 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 GDPD5Q8WTR4 605 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 ST6GALNAC4Q9H4F1 302 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 OLFML3Q9NRN5 406 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 MTMR10Q9NXD2 777 aa13.69□□□□□ -0.22
SKA1-203ENST00000417656 ATG2AQ2TAZ0 1938 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 PLXNA4Q9HCM2 1894 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 RFXAPO00287 272 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 HNRNPDLO14979 420 aaKnown RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 GTPBP6O43824 516 aaPredicted RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 GADD45BO75293 160 aaPredicted RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 OFD1O75665 1012 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 ZNF202O95125 648 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 SCP2P22307 547 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 PROZP22891 400 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 AKAP5P24588 427 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 LIG4P49917 911 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 EPC2Q52LR7 807 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 NOMO2Q5JPE7 1267 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 SPOUT1Q5T280 376 aaKnown RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 MPZL3Q6UWV2 235 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 ZPBP2Q6X784 338 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 LRRC55Q6ZSA7 311 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 UNC13DQ70J99 1090 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 ZNF720Q7Z2F6 126 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 TMEM192Q8IY95 271 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 FMR1NBQ8N0W7 255 aaPredicted RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 CEP120Q8N960 986 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 SLC17A8Q8NDX2 589 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 GLIS3Q8NEA6 775 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 FBXO22Q8NEZ5 403 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 MYLIPQ8WY64 445 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 CLP1Q92989 425 aaKnown RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 HVCN1Q96D96 273 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 ZBTB45Q96K62 511 aaPredicted RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 GAD1Q99259 594 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 MRPL9Q9BYD2 267 aaKnown RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 IKZF4Q9H2S9 585 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 CWH43Q9H720 699 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 PTPRHQ9HD43 1115 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 TYW1Q9NV66 732 aaKnown RBP13.68□□□□□ -0.22
SKA1-203ENST00000417656 SNTG2Q9NY99 539 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 PARP2Q9UGN5 583 aa13.68□□□□□ -0.22
SKA1-203ENST00000417656 TISP43B9A030 160 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 TOM1L1O75674 476 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 RECQL4O94761 1208 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 PIGRP01833 764 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 AFF1P51825 1210 aaKnown RBP13.67□□□□□ -0.22
SKA1-203ENST00000417656 FAM160A1Q05DH4 1040 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 KCNA1Q09470 495 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 NOLC1Q14978 699 aaKnown RBP eCLIP13.67□□□□□ -0.22
SKA1-203ENST00000417656 FAM26FQ5R3K3 315 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 SLC39A4Q6P5W5 647 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 APBB1IPQ7Z5R6 666 aaPredicted RBP13.67□□□□□ -0.22
SKA1-203ENST00000417656 URGCPQ8TCY9 931 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 ZFP42Q96MM3 310 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 SAMD11Q96NU1 681 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 CDX2Q99626 313 aaPredicted RBP13.67□□□□□ -0.22
SKA1-203ENST00000417656 TCHPQ9BT92 498 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 STRA6Q9BX79 667 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 TBC1D13Q9NVG8 400 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 KLK14Q9P0G3 267 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 GDAQ9Y2T3 454 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 RWDD3Q9Y3V2 267 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 ZMYM2Q9UBW7 1377 aa13.67□□□□□ -0.22
SKA1-203ENST00000417656 CDH23Q9H251 3354 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 PDCD11Q14690 1871 aaKnown RBP13.66□□□□□ -0.22
SKA1-203ENST00000417656 ARL5CA6NH57 179 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 KLRC4O43908 158 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 B4GALT3O60512 393 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 PRPF6O94906 941 aaKnown RBP13.66□□□□□ -0.22
SKA1-203ENST00000417656 POMCP01189 267 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 MCF2P10911 925 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 LAG3P18627 525 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 ABCD1P33897 745 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 PBX3P40426 434 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 GRM5P41594 1212 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 MATR3P43243 847 aaKnown RBP eCLIP13.66□□□□□ -0.225e-6■■□□□ 12.5
SKA1-203ENST00000417656 SCNN1GP51170 649 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 OSTNP61366 133 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 EHHADHQ08426 723 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 SNW1Q13573 536 aaKnown RBP13.66□□□□□ -0.22
SKA1-203ENST00000417656 ALCAMQ13740 583 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 L1TD1Q5T7N2 865 aaKnown RBP13.66□□□□□ -0.22
SKA1-203ENST00000417656 THNSL1Q8IYQ7 743 aa13.66□□□□□ -0.22
SKA1-203ENST00000417656 COLGALT1Q8NBJ5 622 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms