RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 CCDC22O60826 627 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 AGTP01019 485 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 TRPC1P48995 793 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 PTGISQ16647 500 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 HIF1AQ16665 826 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 DSTYKQ6XUX3 929 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 SH2D3AQ9BRG2 576 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 RAVER2Q9HCJ3 691 aaKnown RBP12.75□□□□□ -0.37
UBR4-205ENST00000417040 TEKT2Q9UIF3 430 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 AIM2O14862 343 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 GPC3P51654 580 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 MED21Q13503 144 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 KCTD2Q14681 263 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 RFFLQ8WZ73 363 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 FAM49AQ9H0Q0 323 aaPredicted RBP12.75□□□□□ -0.37
UBR4-205ENST00000417040 PCMTD2Q9NV79 361 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 TSC22D4Q9Y3Q8 395 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 ZSCAN9O15535 394 aaPredicted RBP12.75□□□□□ -0.37
UBR4-205ENST00000417040 KCNN4O15554 427 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 ATP6V1B1P15313 513 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 SKOR1P84550 965 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 DPYDQ12882 1025 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 KRT39Q6A163 491 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 HEATR6Q6AI08 1181 aaKnown RBP12.75□□□□□ -0.37
UBR4-205ENST00000417040 TEX9Q8N6V9 391 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 TTC8Q8TAM2 541 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 OTULINQ96BN8 352 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 SHCBP1LQ9BZQ2 653 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 ATG3Q9NT62 314 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 FAM8A1Q9UBU6 413 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 METP08581 1390 aa12.75□□□□□ -0.37
UBR4-205ENST00000417040 TMEM120BA0PK00 339 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 XPOTO43592 962 aaKnown RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 PHF2O75151 1096 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 ADGRF4Q8IZF3 695 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 GRAMD1AQ96CP6 724 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 CEP95Q96GE4 821 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 SLC13A4Q9UKG4 626 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 AATKQ6ZMQ8 1374 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 ZBTB5O15062 677 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 LCP1P13796 627 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 SMARCA1P28370 1054 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 HDAC4P56524 1084 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 COBLL1Q53SF7 1204 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 RHOT1Q8IXI2 618 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 TMEM35BQ8NCS4 154 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.74□□□□□ -0.378e-6■■□□□ 11.9
UBR4-205ENST00000417040 DHX35Q9H5Z1 703 aaKnown RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 VIPAS39Q9H9C1 493 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 IL1RL2Q9HB29 575 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 HPS4Q9NQG7 708 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 UBA6A0AVT1 1052 aaPredicted RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 DAB1O75553 588 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 SESN2P58004 480 aaPredicted RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 EIF3EP60228 445 aaKnown RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 LRIG3Q6UXM1 1119 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 CYP26B1Q9NR63 512 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 USP21Q9UK80 565 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 A0A1W2PQC6 194 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 CCT8L1PA6NM43 557 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 DFFAO00273 331 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 GH2P01242 217 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 GYS1P13807 737 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 CCND1P24385 295 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 BLVRAP53004 296 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 GJB7Q6PEY0 223 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 PRPF39Q86UA1 669 aaKnown RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 VPS39Q96JC1 886 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 ZNF341Q9BYN7 854 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 MLH1P40692 756 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 PAPOLAP51003 745 aaKnown RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 OVGP1Q12889 678 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 MXD4Q14582 209 aaPredicted RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 LVRNQ6Q4G3 990 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 TAGAPQ8N103 731 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 TTC13Q8NBP0 860 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 AGAP3Q96P47 875 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 TMEM117Q9H0C3 514 aa12.74□□□□□ -0.37
UBR4-205ENST00000417040 XPO7Q9UIA9 1087 aaKnown RBP12.74□□□□□ -0.37
UBR4-205ENST00000417040 PVALEFA0A1B0GWK0 134 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 TYW5A2RUC4 315 aaKnown RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 GYPCP04921 128 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 CALB1P05937 261 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 ATP2C1P98194 919 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 BYSLQ13895 437 aaKnown RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 SCARF1Q14162 830 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 SRBD1Q8N5C6 995 aaKnown RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 POLR1AO95602 1720 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 LRRIQ3A6PVS8 624 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 PLEKP08567 350 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 CTCFP49711 727 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 CEP55Q53EZ4 464 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 DCAF15Q66K64 600 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 STAMBPL1Q96FJ0 436 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 ATP6V0A4Q9HBG4 840 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 FHOD1Q9Y613 1164 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 CDH6P55285 790 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 TEDDM1Q5T9Z0 273 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 CYB5D1Q6P9G0 228 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms