RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SVIPQ8NHG7 77 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 C1GALT1C1Q96EU7 318 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 C14orf93Q9H972 538 aaKnown RBP5.89□□□□□ -1.47
VPS54-204ENST00000416400 DMRT3Q9NQL9 472 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 CHST12Q9NRB3 414 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 RAPGEFL1Q9UHV5 662 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 SCOCQ9UIL1 159 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 LIMCH1Q9UPQ0 1083 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 H3BML4 177 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 CDC14BO60729 498 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 HNRNPLP14866 589 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS54-204ENST00000416400 PHKG2P15735 406 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 EDNRBP24530 442 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 WASP42768 502 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 EPHB4P54760 987 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 BPIFB4P59827 614 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 ATP2C1P98194 919 aaPredicted RBP5.88□□□□□ -1.47
VPS54-204ENST00000416400 NFYCQ13952 458 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 GALEQ14376 348 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 RNF151Q2KHN1 245 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 C3orf36Q3SXR2 165 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 GORABQ5T7V8 394 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 CHST15Q7LFX5 561 aaPredicted RBP5.88□□□□□ -1.47
VPS54-204ENST00000416400 SRGAP1Q7Z6B7 1085 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 NKD2Q969F2 451 aaPredicted RBP5.88□□□□□ -1.47
VPS54-204ENST00000416400 HDAC10Q969S8 669 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 NEIL1Q96FI4 390 aaPredicted RBP5.88□□□□□ -1.47
VPS54-204ENST00000416400 FDXACB1Q9BRP7 624 aaPredicted RBP5.88□□□□□ -1.47
VPS54-204ENST00000416400 SLC6A15Q9H2J7 730 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 MYH16Q9H6N6 1097 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 RTEL1Q9NZ71 1219 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 USP25Q9UHP3 1055 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 INTUQ9ULD6 942 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 FAM50BQ9Y247 325 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 IPPQ9Y573 584 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 CTDP1Q9Y5B0 961 aaPredicted RBP5.88□□□□□ -1.47
VPS54-204ENST00000416400 COMMD10Q9Y6G5 202 aa5.88□□□□□ -1.47
VPS54-204ENST00000416400 A0A0A6YYK5 440 aaPredicted RBP5.87□□□□□ -1.47
VPS54-204ENST00000416400 A6NNZ2 444 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 FAM171A2A8MVW0 826 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 FAM227AF5H4B4 570 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 TPP1O14773 563 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 CNOT4O95628 575 aaKnown RBP5.87□□□□□ -1.47
VPS54-204ENST00000416400 IFIT2P09913 472 aaKnown RBP5.87□□□□□ -1.47
VPS54-204ENST00000416400 GSPT1P15170 499 aaKnown RBP5.87□□□□□ -1.47
VPS54-204ENST00000416400 CR2P20023 1033 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 USP14P54578 494 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 MEF2AQ02078 507 aaPredicted RBP5.87□□□□□ -1.47
VPS54-204ENST00000416400 MGAT2Q10469 447 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 TBC1D10BQ4KMP7 808 aaPredicted RBP5.87□□□□□ -1.47
VPS54-204ENST00000416400 IL31Q6EBC2 164 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 OVCH2Q7RTZ1 564 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 CLEC14AQ86T13 490 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 EXOC8Q8IYI6 725 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 UNC5BQ8IZJ1 945 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 PPP1R35Q8TAP8 253 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 SOX7Q9BT81 388 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 MSL2Q9HCI7 577 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 DDX21Q9NR30 783 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS54-204ENST00000416400 RBM12Q9NTZ6 932 aaKnown RBP5.87□□□□□ -1.47
VPS54-204ENST00000416400 OAZ3Q9UMX2 235 aa5.87□□□□□ -1.47
VPS54-204ENST00000416400 ANO9A1A5B4 782 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 APAF1O14727 1248 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 SLC26A4O43511 780 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 PRICKLE3O43900 615 aaPredicted RBP5.86□□□□□ -1.47
VPS54-204ENST00000416400 TUSC2O75896 110 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 UBXN7O94888 489 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 ZBED1O96006 694 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 JUNP05412 331 aaKnown RBP5.86□□□□□ -1.47
VPS54-204ENST00000416400 RHCEP18577 417 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 NEK3P51956 506 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 RHDQ02161 417 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 PLP2Q04941 152 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 CD69Q07108 199 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 PPP3CAQ08209 521 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 NOMO1Q15155 1222 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 TBR1Q16650 682 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 GJC2Q5T442 439 aaPredicted RBP5.86□□□□□ -1.47
VPS54-204ENST00000416400 PPP4R3AQ6IN85 833 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 CYB5RLQ6IPT4 315 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 CCDC149Q6ZUS6 474 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 TAX1BP1Q86VP1 789 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 CIR1Q86X95 450 aaPredicted RBP5.86□□□□□ -1.47
VPS54-204ENST00000416400 FAM43AQ8N2R8 423 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 ANKRD53Q8N9V6 530 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 PPP1R14CQ8TAE6 165 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 RIN2Q8WYP3 895 aaPredicted RBP5.86□□□□□ -1.47
VPS54-204ENST00000416400 RABGGTAQ92696 567 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 DPF2Q92785 391 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 SLC39A13Q96H72 371 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 RPL10LQ96L21 214 aaKnown RBP5.86□□□□□ -1.47
VPS54-204ENST00000416400 BDH2Q9BUT1 245 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 NCDNQ9UBB6 729 aa5.86□□□□□ -1.47
VPS54-204ENST00000416400 CFAP20Q9Y6A4 193 aaKnown RBP5.86□□□□□ -1.47
VPS54-204ENST00000416400 A0A0G2JLL6 359 aaPredicted RBP5.85□□□□□ -1.47
VPS54-204ENST00000416400 A0A1W2PRX2 142 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 C2orf78A6NCI8 922 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 NRP1O14786 923 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 B3GALT2O43825 422 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 PRAMEF4O60810 478 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms