RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.75□□□□□ -0.371e-7■■■■□ 22.3
PTPRF-205ENST00000414879 SENP2Q9HC62 589 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 KIAA1257Q9ULG3 409 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 FAM205CA6NFA0 338 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 HMGB1P1B2RPK0 211 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-205ENST00000414879 H3BRJ5 948 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 SMAPO00193 183 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 RALAP11233 206 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 ACTR2P61160 394 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 SV2CQ496J9 727 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 NOTUMQ6P988 496 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 CLEC10AQ8IUN9 316 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 SH3TC2Q8TF17 1288 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 TAAR1Q96RJ0 339 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 PCDHB2Q9Y5E7 798 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 MYPNQ86TC9 1320 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 CHGBP05060 677 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 VCAM1P19320 739 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 SERPINB6P35237 376 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 DHX9Q08211 1270 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 RPS6KA2Q15349 733 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 PPP2R3CQ969Q6 453 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 MED15Q96RN5 788 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 NUP85Q9BW27 656 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 CACYBPQ9HB71 228 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 KBTBD4Q9NVX7 518 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 TLK1Q9UKI8 766 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 PTPN22Q9Y2R2 807 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 ATRNO75882 1429 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 SUPT20HL2P0C7V6 817 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 PCSK1P29120 753 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 BASP1P80723 227 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 STK4Q13043 487 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 FIGNQ5HY92 759 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 ATF7IP2Q5U623 682 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 VPS39Q96JC1 886 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 SLC4A9Q96Q91 983 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 TMEM106CQ9BVX2 250 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 PIN4Q9Y237 131 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 DDTLA6NHG4 134 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 APOEP02649 317 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 GUCY2CP25092 1073 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 INHBEP58166 350 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 IRX5P78411 483 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 APOBEC3HQ6NTF7 200 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 RILPQ96NA2 401 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 C11orf70Q9BRQ4 267 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 FAM96AQ9H5X1 160 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 INTS9Q9NV88 658 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 PARP4Q9UKK3 1724 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 C6orf222P0C671 652 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 CYP2C9P11712 490 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 ZNF18P17022 549 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 GNGT1P63211 74 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 CDK17Q00537 523 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 ANKRD42Q8N9B4 389 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 ACER1Q8TDN7 264 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 TRIM56Q9BRZ2 755 aaKnown RBP12.74□□□□□ -0.37
PTPRF-205ENST00000414879 FOXP3Q9BZS1 431 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 HPCAL4Q9UM19 191 aa12.74□□□□□ -0.37
PTPRF-205ENST00000414879 KRT37O76014 449 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 SUN1O94901 812 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 NCOA4Q13772 614 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 PCSK9Q8NBP7 692 aaKnown RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 APPL2Q8NEU8 664 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 PPP1R16BQ96T49 567 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 ZMYM2Q9UBW7 1377 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 FOXN1O15353 648 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 UCHL3P15374 230 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 ARPP19P56211 112 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 SNX17Q15036 470 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 MAPRE1Q15691 268 aaKnown RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 SCYL1Q96KG9 808 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 USH1CQ9Y6N9 552 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 TARSL2A2RTX5 802 aaKnown RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 CARNS1A5YM72 827 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 PSMD3O43242 534 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 TEX33O43247 280 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 CYP2C8P10632 490 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 HSPA8P11142 646 aaKnown RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 ZNF131P52739 623 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 RBM43Q6ZSC3 357 aaKnown RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 EFHBQ8N7U6 833 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 C18orf8Q96DM3 657 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 INPP5FQ9Y2H2 1132 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 TAF6LQ9Y6J9 622 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 MARF1Q9Y4F3 1742 aaKnown RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 RASGRF2O14827 1237 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 HOXA2O43364 376 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 MT-ND3P03897 115 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 TRIM49P0CI25 452 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 TRIM49CP0CI26 452 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 PIGHQ14442 188 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 C4orf22Q6V702 233 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 DCP1BQ8IZD4 617 aaKnown RBP12.73□□□□□ -0.37
PTPRF-205ENST00000414879 TMC2Q8TDI7 906 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 PYROXD1Q8WU10 500 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 NUDCD1Q96RS6 583 aa12.73□□□□□ -0.37
PTPRF-205ENST00000414879 RPS6KA5O75582 802 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms