RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 UXS1Q8NBZ7 420 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 FAM227BQ96M60 508 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 FOXP3Q9BZS1 431 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 FEN1P39748 380 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ESRP1Q6NXG1 681 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 LARGE2Q8N3Y3 721 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 PPM1NQ8N819 430 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 MIF4GDA9UHW6 222 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 SRP72O76094 671 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 TYK2P29597 1187 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 PLEKHA7Q6IQ23 1121 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 FBXO38Q6PIJ6 1188 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 EPN3Q9H201 632 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 AVENQ9NQS1 362 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 TRIM32Q13049 653 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 PMF1Q6P1K2 205 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 TOGARAM2Q6ZUX3 1019 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 RIN3Q8TB24 985 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ATP6V1G3Q96LB4 118 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ADCY9O60503 1353 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 A0A0B4J269 797 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 ARL4DP49703 201 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 CYP4A11Q02928 519 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 TUBB3Q13509 450 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 CYP4A22Q5TCH4 519 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 NPHS2Q9NP85 383 aa14.05□□□□□ -0.16
CCDC88A-204ENST00000413716 TGFBR2P37173 567 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 MXI1P50539 228 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 SLC39A6Q13433 755 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 GTF2H3Q13889 308 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 OR6P1Q8NGX9 317 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ARHGEF6Q15052 776 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ZNF618Q5T7W0 954 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 SEPT1Q8WYJ6 367 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 SPATA16Q9BXB7 569 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 PRRG3Q9BZD7 231 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 PIK3CDO00329 1044 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 S100A6P06703 90 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 PDAP1Q13442 181 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 C11orf74Q86VG3 221 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 C10orf53Q8N6V4 93 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 KBTBD3Q8NAB2 608 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 IL17RAQ96F46 866 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 EEF2KMTQ96G04 330 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 VMP1Q96GC9 406 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 FAM129BQ96TA1 746 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 CCDC87Q9NVE4 849 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 PCDHA1Q9Y5I3 950 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ADGRA3Q8IWK6 1321 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 GRID2IPA4D2P6 1211 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 TAF4O00268 1085 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 BTN3A3O00478 584 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 IKBKBO14920 756 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 RRM2P31350 389 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ARF5P84085 180 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 EIF2B5Q13144 721 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ZNF513Q8N8E2 541 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 GPKOWQ92917 476 aaPredicted RBP eCLIP14.04□□□□□ -0.162e-6■■□□□ 12.1
CCDC88A-204ENST00000413716 XPO6Q96QU8 1125 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 A0A1W2PRG6 482 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 PWP1Q13610 501 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ENKURQ8TC29 256 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 AFG1LQ8WV93 481 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 REXO4Q9GZR2 422 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 FKBP14Q9NWM8 211 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 NRBP1Q9UHY1 535 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 AP3B1O00203 1094 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 SGSM2O43147 1006 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 PALMO75781 387 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 DDB1Q16531 1140 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 DPP9Q86TI2 863 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 UBA2Q9UBT2 640 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ZFYVE9O95405 1425 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 RPN2P04844 631 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 ATP6V1B1P15313 513 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 HNMTP50135 292 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 LPIN2Q92539 896 aa14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 NGRNQ9NPE2 291 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-204ENST00000413716 VPS37AQ8NEZ2 397 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 TSEN34Q9BSV6 310 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 PIK3R1P27986 724 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ME3Q16798 604 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ABCC1P33527 1531 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 EYA2O00167 538 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 UBXN6Q9BZV1 441 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ZFATQ9P243 1243 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ADD3Q9UEY8 706 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 SH3GLB1Q9Y371 365 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 SOAT1P35610 550 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 KCNQ4P56696 695 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ZBED6P86452 979 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ADRM1Q16186 407 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 MDH1BQ5I0G3 518 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ZNF713Q8N859 430 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 SPTLC3Q9NUV7 552 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 PCDHA7Q9UN72 937 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 PPIP5K1Q6PFW1 1433 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 ENO3P13929 434 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 FAM47AQ5JRC9 791 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 FBXO42Q6P3S6 717 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms