RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 EXOC3L1Q86VI1 746 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 FBXO11Q86XK2 927 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SAMD3Q8N6K7 520 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 RSRC1Q96IZ7 334 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 MAGEB18Q96M61 343 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 IWS1Q96ST2 819 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 P2RX7Q99572 595 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 DPH5Q9H2P9 285 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CENPHQ9H3R5 247 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 EHMT1Q9H9B1 1298 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SSU72Q9NP77 194 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 FETUBQ9UGM5 382 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 DBR1Q9UK59 544 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 NEU2Q9Y3R4 380 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 KIF3CO14782 793 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 HNRNPCL1O60812 293 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 IVDP26440 423 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 STAT3P40763 770 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SLC1A1P43005 524 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PRELPP51888 382 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PLTPP55058 493 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 COPS2P61201 443 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 RRP1BQ14684 758 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CBWD6Q4V339 395 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PRR16Q569H4 304 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CBWD3Q5JTY5 395 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CBWD5Q5RIA9 395 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SYDE2Q5VT97 1194 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SLFN13Q68D06 897 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 TTC27Q6P3X3 843 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PPP1R21Q6ZMI0 780 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 ENOSF1Q7L5Y1 443 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 ZDHHC14Q8IZN3 488 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SHC3Q92529 594 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 RIT2Q99578 217 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SEMA4AQ9H3S1 761 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 AZI2Q9H6S1 392 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PLSCR2Q9NRY7 297 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 NOP53Q9NZM5 478 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 BCCIPQ9P287 314 aaKnown RBP eCLIP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PPP1R1BQ9UD71 204 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 POLLQ9UGP5 575 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SUFUQ9UMX1 484 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 ARIH1Q9Y4X5 557 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SCN9AQ15858 1988 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 RSPH10B2B2RC85 870 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 TRAFD1O14545 582 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 ZC3H11AO75152 810 aaKnown RBP eCLIP6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 ECEL1O95672 775 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 TTC4O95801 387 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 RSPH10BP0C881 870 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 MYBL1P10243 752 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 DNA2P51530 1060 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 STAT4Q14765 748 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 TRAPPC3LQ5T215 181 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 TCERG1LQ5VWI1 586 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 APOBEC3HQ6NTF7 200 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 CDC42EP5Q6NZY7 148 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 DRICH1Q6PGQ1 229 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 POTEHQ6S545 545 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 VSTM1Q6UX27 236 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 ZNF677Q86XU0 584 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 SIAH1Q8IUQ4 282 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM178BQ8IXR5 827 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 MDM1Q8TC05 714 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 ZNF398Q8TD17 642 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 EPS8L1Q8TE68 723 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 N4BP2L2Q92802 583 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 INPP5DQ92835 1189 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 C18orf8Q96DM3 657 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM212AQ96EL1 285 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 TRIM11Q96F44 468 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 SNF8Q96H20 258 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 LRRC4CQ9HCJ2 640 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 AAASQ9NRG9 546 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 SENP1Q9P0U3 644 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 PI4KBQ9UBF8 816 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 JAG2Q9Y219 1238 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 SSC5DA1L4H1 1573 aa6.15□□□□□ -1.42
CCDC88A-203ENST00000412148 SMCHD1A6NHR9 2005 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 FOXN3O00409 490 aaPredicted RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 EML1O00423 815 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 PRPF4O43172 522 aaKnown RBP eCLIP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 LUC7L3O95232 432 aaKnown RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 FTLP02792 175 aaPredicted RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 EEF2P13639 858 aaKnown RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 KRT13P13646 458 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 CHRNB2P17787 502 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 COMTP21964 271 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 SCP2P22307 547 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 GCKP35557 465 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 GPC3P51654 580 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 YARSP54577 528 aaKnown RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 RWDD2BP57060 319 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 IFI35P80217 286 aaPredicted RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 GTF2BQ00403 316 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 CALCOCO2Q13137 446 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 RASA3Q14644 834 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 MTFR1Q15390 333 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms