RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ELOA2Q8IYF1 753 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 ATL2Q8NHH9 583 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 KRT35Q92764 455 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 MIEF2Q96C03 454 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 CALN1Q9BXU9 219 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 SAP30BPQ9UHR5 308 aaKnown RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 MRPL11Q9Y3B7 192 aaKnown RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 YEATS2Q9ULM3 1422 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 SSU72P8A0A1W2PR75 194 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 CHL1O00533 1208 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 CA8P35219 290 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 ARMC4Q5T2S8 1044 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 CCNI2Q6ZMN8 369 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 MYCBPAPQ8TBZ2 947 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 BAZ2BQ9UIF8 2168 aaKnown RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 KIF20BQ96Q89 1820 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 ZBTB24O43167 697 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 VIL1P09327 827 aaKnown RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 LIFRP42702 1097 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 GSTA3Q16772 222 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 P3H1Q32P28 736 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 TIMM50Q3ZCQ8 353 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 TUBA3EQ6PEY2 450 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 PRR23BQ6ZRT6 265 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 MSL3Q8N5Y2 521 aaKnown RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 USHBP1Q8N6Y0 703 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 GPR108Q9NPR9 543 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 C8orf4Q9NR00 106 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 SASH1O94885 1247 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 RUNDC3AQ59EK9 446 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 CYP4F11Q9HBI6 524 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 SPDYE16A6NNV3 312 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 TAF4O00268 1085 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 BIRC5O15392 142 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 FAM58BPP0C7Q3 252 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 SPDYE2Q495Y8 402 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 TAGAPQ8N103 731 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 ZNF184Q99676 751 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 PHF2O75151 1096 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 VSNL1P62760 191 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 VPS50Q96JG6 964 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 CDHR1Q96JP9 859 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 ALDH8A1Q9H2A2 487 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 KRCC1Q9NPI7 259 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 CIITAP33076 1130 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 C1DQ13901 141 aaKnown RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 UBE3CQ15386 1083 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 IMPG1Q17R60 797 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 NSUN7Q8NE18 718 aaKnown RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 NEO1Q92859 1461 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 IRS4O14654 1257 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 RAB25P57735 213 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 ARPC4P59998 168 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 SVOPQ8N4V2 548 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 ZCCHC17Q9NP64 241 aaKnown RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 H2AFXP16104 143 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 TGFBR2P37173 567 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 TTC27Q6P3X3 843 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 CTNNAL1Q9UBT7 734 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 IP6K2Q9UHH9 426 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 F8VZ95 297 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 DLATP10515 647 aaKnown RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 ATN1P54259 1190 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 C21orf59P57076 290 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 KDSRQ06136 332 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 CYFIP1Q7L576 1253 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 P3H2Q8IVL5 708 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 CDKL3Q8IVW4 592 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 RHOT1Q8IXI2 618 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 ASNSD1Q9NWL6 643 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 P4HA2O15460 535 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 ENO1P06733 434 aaKnown RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 OLR1P78380 273 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 PICALMQ13492 652 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 SLC10A4Q96EP9 437 aa13.59□□□□□ -0.23
COL6A3-206ENST00000409809 G3BP2Q9UN86 482 aaKnown RBP13.59□□□□□ -0.23
COL6A3-206ENST00000409809 USP1O94782 785 aa13.58□□□□□ -0.23
COL6A3-206ENST00000409809 IFNAR1P17181 557 aa13.58□□□□□ -0.23
COL6A3-206ENST00000409809 TBC1D10BQ4KMP7 808 aaPredicted RBP13.58□□□□□ -0.23
COL6A3-206ENST00000409809 SPDYCQ5MJ68 293 aa13.58□□□□□ -0.23
COL6A3-206ENST00000409809 TAF2Q6P1X5 1199 aa13.58□□□□□ -0.23
COL6A3-206ENST00000409809 UNC13DQ70J99 1090 aa13.58□□□□□ -0.23
COL6A3-206ENST00000409809 GPCPD1Q9NPB8 672 aa13.58□□□□□ -0.23
COL6A3-206ENST00000409809 ZNF532Q9HCE3 1301 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 RPS6KA5O75582 802 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 FAM45AQ8TCE6 357 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 THTPAQ9BU02 230 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 ISCUQ9H1K1 167 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 SPDYE2BA6NHP3 402 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 SPDYE6P0CI01 402 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 FRMD8P1Q9BZ68 369 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-206ENST00000409809 NPHS2Q9NP85 383 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 SCP2P22307 547 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 PRMT9Q6P2P2 845 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 CCDC36Q8IYA8 594 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 PDCD6IPQ8WUM4 868 aaKnown RBP13.58□□□□□ -0.24
COL6A3-206ENST00000409809 MPP4Q96JB8 637 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 SF3B1O75533 1304 aaKnown RBP eCLIP13.58□□□□□ -0.24
COL6A3-206ENST00000409809 RESTQ13127 1097 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms