RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GPRC5CQ9NQ84 441 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 OLFML3Q9NRN5 406 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 ATAD5Q96QE3 1844 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 HIP1RO75146 1068 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 GHRP10912 638 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 C1orf220Q5T0J3 134 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 C6orf118Q5T5N4 469 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 SLC13A5Q86YT5 568 aaPredicted RBP22.52■■□□□ 1.2
CTCF-202ENST00000401394 SLF2Q8IX21 1173 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 C9orf72Q96LT7 481 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 ASIC3Q9UHC3 531 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 R3HDM2Q9Y2K5 976 aaKnown RBP22.52■■□□□ 1.2
CTCF-202ENST00000401394 GTPBP10A4D1E9 387 aaKnown RBP22.52■■□□□ 1.2
CTCF-202ENST00000401394 ZNF570Q96NI8 536 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 KIFC3Q9BVG8 833 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 RASAL2Q9UJF2 1139 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 AFF2P51816 1311 aa22.52■■□□□ 1.2
CTCF-202ENST00000401394 AGTP01019 485 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 CHRNA3P32297 505 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 KRT17Q04695 432 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 MTM1Q13496 603 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 RNF207Q6ZRF8 634 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 SEMA4DQ92854 862 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 KREMEN1Q96MU8 473 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 FAM167BQ9BTA0 163 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 USP20Q9Y2K6 914 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 HLA-DOAP06340 250 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 NQO1P15559 274 aaKnown RBP22.51■■□□□ 1.19
CTCF-202ENST00000401394 GPC5P78333 572 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 ARMC9Q7Z3E5 817 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 SRRM1Q8IYB3 904 aaKnown RBP22.51■■□□□ 1.19
CTCF-202ENST00000401394 ART4Q93070 314 aa22.51■■□□□ 1.19
CTCF-202ENST00000401394 MTRF1LQ9UGC7 380 aaKnown RBP22.51■■□□□ 1.19
CTCF-202ENST00000401394 K7ENM7 598 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 MYCNP04198 464 aaPredicted RBP22.5■■□□□ 1.19
CTCF-202ENST00000401394 GJC1P36383 396 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 KIF22Q14807 665 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 RC3H1Q5TC82 1133 aaKnown RBP22.5■■□□□ 1.19
CTCF-202ENST00000401394 C15orf52Q6ZUT6 534 aaKnown RBP22.5■■□□□ 1.19
CTCF-202ENST00000401394 UBL4BQ8N7F7 174 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 TBC1D22AQ8WUA7 517 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 KLHL29Q96CT2 875 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 SAAL1Q96ER3 474 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 TMEM237Q96Q45 408 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 UNC45AQ9H3U1 944 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 SPAG7O75391 227 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 GH2P01242 217 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 ADCY2Q08462 1091 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 SEL1L2Q5TEA6 688 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 COL23A1Q86Y22 540 aaPredicted RBP22.5■■□□□ 1.19
CTCF-202ENST00000401394 FAXDC2Q96IV6 333 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 PI4K2AQ9BTU6 479 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 KIF9Q9HAQ2 790 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 DMAC2Q9NW81 257 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 PCYOX1Q9UHG3 505 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.5■■□□□ 1.19
CTCF-202ENST00000401394 RARGP13631 454 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 ZNF564Q8TBZ8 553 aaPredicted RBP22.5■■□□□ 1.19
CTCF-202ENST00000401394 EPS8L1Q8TE68 723 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 ZNF653Q96CK0 615 aa22.5■■□□□ 1.19
CTCF-202ENST00000401394 USP15Q9Y4E8 981 aaPredicted RBP22.5■■□□□ 1.19
CTCF-202ENST00000401394 SYDE2Q5VT97 1194 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 FAM20AQ96MK3 541 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 NAP1L3Q99457 506 aaPredicted RBP22.49■■□□□ 1.19
CTCF-202ENST00000401394 FAM198AQ9UFP1 575 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 SYNGAP1Q96PV0 1343 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 GJB6O95452 261 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 AP3B2Q13367 1082 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 ITIH4Q14624 930 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 ATP6V0A4Q9HBG4 840 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 KLHL11Q9NVR0 708 aa22.49■■□□□ 1.19
CTCF-202ENST00000401394 GAS7O60861 476 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 BRAFP15056 766 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 PPP2R5AQ15172 486 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 SLC5A5Q92911 643 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 CD101Q93033 1021 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 LXNQ9BS40 222 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 GYS1P13807 737 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 FOXN2P32314 431 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 ITGA8P53708 1063 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 SOX10P56693 466 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 CRY2Q49AN0 593 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 MIGA2Q7L4E1 593 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 ANKS1BQ7Z6G8 1248 aa22.48■■□□□ 1.19
CTCF-202ENST00000401394 POLR3CQ9BUI4 534 aaPredicted RBP22.48■■□□□ 1.19
CTCF-202ENST00000401394 ZC3H12CQ9C0D7 883 aaKnown RBP22.48■■□□□ 1.19
CTCF-202ENST00000401394 PSMD10O75832 226 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 ALAS1P13196 640 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 CYP4F22Q6NT55 531 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 CBWD2Q8IUF1 395 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 ACER1Q8TDN7 264 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 RBM17Q96I25 401 aaKnown RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 SLCO1B3Q9NPD5 702 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 PRR12Q9ULL5 1215 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 ADRB2P07550 413 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 SLC8A1P32418 973 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 CRKP46108 304 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 FMO1Q01740 532 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 SGO2Q562F6 1265 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 TNFAIP8L3Q5GJ75 292 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms