RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 GLRA2P23416 452 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 MESDQ14696 234 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 SKIDA1Q1XH10 827 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 BTBD6Q96KE9 485 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 NT5C1BQ96P26 610 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 MSTO1Q9BUK6 570 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 PORCNQ9H237 461 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 VPS18Q9P253 973 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 RAB21Q9UL25 225 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 GINS2Q9Y248 185 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 FARP2O94887 1054 aaPredicted RBP12.02□□□□□ -0.49
TCOF1-203ENST00000394269 MMEP08473 750 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 TXNP10599 105 aaKnown RBP12.02□□□□□ -0.49
TCOF1-203ENST00000394269 COPB2P35606 906 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 GUCY2FP51841 1108 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 TRADDQ15628 312 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 NFIL3Q16649 462 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 TAS1R3Q7RTX0 852 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 RHPN2Q8IUC4 686 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 SEPT1Q8WYJ6 367 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 RPGRIP1Q96KN7 1286 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 KREMEN1Q96MU8 473 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 TRIM31Q9BZY9 425 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 EPB41L5Q9HCM4 733 aa12.02□□□□□ -0.49
TCOF1-203ENST00000394269 TTLL13PA6NNM8 815 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 KIF4AO95239 1232 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 MFAP3P55082 362 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 TUBB4BP68371 445 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 GPS2Q13227 327 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 NEDD9Q14511 834 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 RNF149Q8NC42 400 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 LMBR1Q8WVP7 490 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 TIPINQ9BVW5 301 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 PCDHGC5Q9Y5F6 944 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 WNT7BP56706 349 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 CYP24A1Q07973 514 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 HLTFQ14527 1009 aaKnown RBP eCLIP12.01□□□□□ -0.49
TCOF1-203ENST00000394269 BRDTQ58F21 947 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-203ENST00000394269 C10orf76Q5T2E6 689 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 ARMC9Q7Z3E5 817 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 NOP9Q86U38 636 aaKnown RBP12.01□□□□□ -0.49
TCOF1-203ENST00000394269 AMFRQ9UKV5 643 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 DNAH12Q6ZR08 3092 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 A0A0G2JLL6 359 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-203ENST00000394269 H3BQF6 201 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 INO80B-WBP1J3KQ70 363 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 ZNF394Q53GI3 561 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 PRRT2Q7Z6L0 340 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-203ENST00000394269 USP37Q86T82 979 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 PASD1Q8IV76 773 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 THNSL1Q8IYQ7 743 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 PCYT2Q99447 389 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 SENP7Q9BQF6 1050 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 INO80BQ9C086 356 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-203ENST00000394269 DDX47Q9H0S4 455 aaKnown RBP12.01□□□□□ -0.49
TCOF1-203ENST00000394269 RRAGCQ9HB90 399 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 TSKSQ9UJT2 592 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 FBXL5Q9UKA1 691 aa12.01□□□□□ -0.49
TCOF1-203ENST00000394269 KRIT1O00522 736 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 STAM2O75886 525 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 HEXIM1O94992 359 aaKnown RBP12□□□□□ -0.49
TCOF1-203ENST00000394269 MYCNP04198 464 aaPredicted RBP12□□□□□ -0.49
TCOF1-203ENST00000394269 GLI1P08151 1106 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 OSBPP22059 807 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 MKRN4PQ13434 485 aaPredicted RBP12□□□□□ -0.49
TCOF1-203ENST00000394269 MAP9Q49MG5 647 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 WDR44Q5JSH3 913 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 CCNI2Q6ZMN8 369 aaPredicted RBP12□□□□□ -0.49
TCOF1-203ENST00000394269 SLC17A8Q8NDX2 589 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 SPIRE2Q8WWL2 714 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 SELENOOQ9BVL4 669 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 RBAKQ9NYW8 714 aaPredicted RBP12□□□□□ -0.49
TCOF1-203ENST00000394269 AGTPBP1Q9UPW5 1226 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 NFASCO94856 1347 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 ATAD5Q96QE3 1844 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 CLDN3O15551 220 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 PIK3CAP42336 1068 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 MYBPC2Q14324 1141 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 FAM160B1Q5W0V3 765 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 SCARA3Q6AZY7 606 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 PCDHB18PQ96TA0 734 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 NTPCRQ9BSD7 190 aaKnown RBP12□□□□□ -0.49
TCOF1-203ENST00000394269 TMEM8AQ9HCN3 771 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 NFU1Q9UMS0 254 aa12□□□□□ -0.49
TCOF1-203ENST00000394269 MAFBQ9Y5Q3 323 aaPredicted RBP12□□□□□ -0.49
TCOF1-203ENST00000394269 ITGA4P13612 1032 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 AADACL2Q6P093 401 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 C1orf112Q9NSG2 853 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 STIM2Q9P246 746 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 SPDYE5A6NIY4 337 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 FGGP02679 453 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 PRLRP16471 622 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 SSR1P43307 286 aaKnown RBP11.99□□□□□ -0.49
TCOF1-203ENST00000394269 PDE6CP51160 858 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 CLCN3P51790 818 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 CPA5Q8WXQ8 436 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 ZNF516Q92618 1163 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 SCLT1Q96NL6 688 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 ST6GALNAC4Q9H4F1 302 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 C17orf75Q9HAS0 396 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms