RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 DEPDC7Q96QD5 511 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 HIST1H2AJQ99878 128 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 H2AFJQ9BTM1 129 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 POTEMA6NI47 508 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 USP17L5A8MUK1 530 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 SERPING1P05155 500 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 ARL4CP56559 192 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 FUT11Q495W5 492 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 PLD3Q8IV08 490 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 ZBED8Q8IZ13 594 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 EAF2Q96CJ1 260 aaPredicted RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 NUP85Q9BW27 656 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 POLR3FQ9H1D9 316 aaPredicted RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 TMEM245Q9H330 911 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 TMEM260Q9NX78 707 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 A0A1W2PP64 1363 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 FCER1AP12319 257 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 MLNP12872 115 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 TTLL4Q14679 1199 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 LAYNQ6UX15 382 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 FAM162AQ96A26 154 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 CCDC17Q96LX7 622 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 UTP6Q9NYH9 597 aaKnown RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 PCDHGA4Q9Y5G9 962 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 GRK2P25098 689 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 SDC4P31431 198 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 GFPT1Q06210 699 aaPredicted RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 DDX39BQ13838 428 aaKnown RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 DPCR1Q3MIW9 517 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 KRT78Q8N1N4 520 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.14□□□□□ -0.31
CHD3-203ENST00000380358 SHCBP1LQ9BZQ2 653 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 ZNF556Q9HAH1 456 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 RALGAPBQ86X10 1494 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 PRXQ9BXM0 1461 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 DAB1O75553 588 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 ATP12AP54707 1039 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 ROR1Q01973 937 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 PDIA2Q13087 525 aaKnown RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 TOGARAM2Q6ZUX3 1019 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 TRIM33Q9UPN9 1127 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 KRT37O76014 449 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 FYNP06241 537 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 SPARCL1Q14515 664 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 ZRANB3Q5FWF4 1079 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 ZNF658Q5TYW1 1059 aaPredicted RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 BNIPLQ7Z465 357 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 GUCA1AP43080 201 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 SURF1Q15526 300 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 OOSP2Q86WS3 158 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 CCDC33Q8N5R6 958 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 C1orf54Q8WWF1 131 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 TSEN34Q9BSV6 310 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 FHDC1Q9C0D6 1143 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 MRPL42Q9Y6G3 142 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 PLEKHA8P1O95397 391 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 MMEP08473 750 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 TYK2P29597 1187 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 EIF4A1P60842 406 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 PLCL1Q15111 1095 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 ENTPD7Q9NQZ7 604 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 PYCARDQ9ULZ3 195 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 PCDHB6Q9Y5E3 794 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 KCNN4O15554 427 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 ZNF772Q68DY9 489 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 KLHL24Q6TFL4 600 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 NFKBIZQ9BYH8 718 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 GCOM2Q9BZD3 368 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 LMBRD1Q9NUN5 540 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 MARCOQ9UEW3 520 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 ENO1P06733 434 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 SP100P23497 879 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 FEN1P39748 380 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 C16orf72Q14CZ0 275 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 ALS2CLQ60I27 953 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 SCARA3Q6AZY7 606 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 NEK9Q8TD19 979 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 GPBP1L1Q9HC44 474 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 COPG1Q9Y678 874 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 NCF1BA6NI72 391 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 NCF1CA8MVU1 366 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 NCF1P14598 390 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 CMA1P23946 247 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 ATN1P54259 1190 aaPredicted RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 EPHB4P54760 987 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 TPI1P60174 286 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 KDSRQ06136 332 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 SLC44A4Q53GD3 710 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 KAT2BQ92831 832 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 IGFLR1Q9H665 355 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 TTLL13PA6NNM8 815 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 POLRMTO00411 1230 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 NMT2O60551 498 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 FLT3P36888 993 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 CRKP46108 304 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 CDH6P55285 790 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 FKBP3Q00688 224 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 ANKS6Q68DC2 871 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 GALNT17Q6IS24 598 aa13.13□□□□□ -0.31
CHD3-203ENST00000380358 FAM118BQ9BPY3 351 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms