RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PACSIN2Q9UNF0 486 aaPredicted RBP23.29■■□□□ 1.32
TRIM54-202ENST00000380075 STXBP5LQ9Y2K9 1186 aa23.29■■□□□ 1.32
TRIM54-202ENST00000380075 A0A0G2JMZ2 1700 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 TISP43B9A030 160 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 CAP1Q01518 475 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 ARHGAP39Q9C0H5 1083 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 EFCC1Q9HA90 598 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 GDF3Q9NR23 364 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 VPS18Q9P253 973 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 SLC9A2Q9UBY0 812 aa23.28■■□□□ 1.32
TRIM54-202ENST00000380075 DIS3Q9Y2L1 958 aaKnown RBP23.28■■□□□ 1.32
TRIM54-202ENST00000380075 COL11A1P12107 1806 aaPredicted RBP23.28■■□□□ 1.32
TRIM54-202ENST00000380075 ANKRD62A6NC57 917 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 FOXN3O00409 490 aaPredicted RBP23.27■■□□□ 1.32
TRIM54-202ENST00000380075 HSPA8P11142 646 aaKnown RBP23.27■■□□□ 1.32
TRIM54-202ENST00000380075 SCP2P22307 547 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 CTGFP29279 349 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 GCLMP48507 274 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 LACTBP83111 547 aaPredicted RBP23.27■■□□□ 1.32
TRIM54-202ENST00000380075 TMC2Q8TDI7 906 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.27■■□□□ 1.32
TRIM54-202ENST00000380075 AGPAT1Q99943 283 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 A1CFQ9NQ94 594 aaKnown RBP23.27■■□□□ 1.32
TRIM54-202ENST00000380075 FKTNO75072 461 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 STBD1O95210 358 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 GTF2H1P32780 548 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 DNA2P51530 1060 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 CCNA1P78396 465 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 SLC7A5Q01650 507 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 SNRNP35Q16560 246 aaKnown RBP23.27■■□□□ 1.32
TRIM54-202ENST00000380075 DAAM2Q86T65 1068 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 RIOX2Q8IUF8 465 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 EIF1ADQ8N9N8 165 aaKnown RBP23.27■■□□□ 1.32
TRIM54-202ENST00000380075 SH2D3AQ9BRG2 576 aa23.27■■□□□ 1.32
TRIM54-202ENST00000380075 DENND3A2RUS2 1198 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 SPATA31C2B4DYI2 1134 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 PGRMC1O00264 195 aaKnown RBP23.26■■□□□ 1.31
TRIM54-202ENST00000380075 ZNF862O60290 1169 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 RGS20O76081 388 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 CNGA1P29973 690 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 HADHBP55084 474 aaKnown RBP23.26■■□□□ 1.31
TRIM54-202ENST00000380075 PAK2Q13177 524 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 TCEAL1Q15170 157 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 MIS18BP1Q6P0N0 1132 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 NT5DC3Q86UY8 548 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 NCAPG2Q86XI2 1143 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 GSPT2Q8IYD1 628 aaKnown RBP23.26■■□□□ 1.31
TRIM54-202ENST00000380075 RASGEF1CQ8N431 466 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 CHST13Q8NET6 341 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 SCFD2Q8WU76 684 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 FBXL18Q96ME1 805 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 TMEM117Q9H0C3 514 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 PDLIM7Q9NR12 457 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 AMFRQ9UKV5 643 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 COQ4Q9Y3A0 265 aa23.26■■□□□ 1.31
TRIM54-202ENST00000380075 CCDC188H7C350 402 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 LBX1P52954 281 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 KRT39Q6A163 491 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 SND1Q7KZF4 910 aaKnown RBP eCLIP23.25■■□□□ 1.31
TRIM54-202ENST00000380075 RHOT2Q8IXI1 618 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 DNERQ8NFT8 737 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 CD99L2Q8TCZ2 262 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 HES6Q96HZ4 224 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.25■■□□□ 1.31
TRIM54-202ENST00000380075 FAN1Q9Y2M0 1017 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 PFASO15067 1338 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 TMCO5BA8MYB1 307 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 ADRB2P07550 413 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 ADSSP30520 456 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 CTCFP49711 727 aaPredicted RBP23.25■■□□□ 1.31
TRIM54-202ENST00000380075 WDR78Q5VTH9 848 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 ABHD15Q6UXT9 468 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 ARHGEF19Q8IW93 802 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 METTL13Q8N6R0 699 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 SLC35G2Q8TBE7 412 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 PLEKHO2Q8TD55 490 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 KCNN1Q92952 543 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 ATP6V0A4Q9HBG4 840 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 TMEM8AQ9HCN3 771 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 TTC7AQ9ULT0 858 aaPredicted RBP23.25■■□□□ 1.31
TRIM54-202ENST00000380075 IGSF9BQ9UPX0 1349 aa23.25■■□□□ 1.31
TRIM54-202ENST00000380075 CEP104O60308 925 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 LRRN2O75325 713 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 HEXIM1O94992 359 aaKnown RBP23.24■■□□□ 1.31
TRIM54-202ENST00000380075 GARTP22102 1010 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 PSMC4P43686 418 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 ACTR2P61160 394 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 BRDTQ58F21 947 aaPredicted RBP23.24■■□□□ 1.31
TRIM54-202ENST00000380075 SWSAP1Q6NVH7 229 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 PARD3BQ8TEW8 1205 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 IFT74Q96LB3 600 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 MFSD14AQ96MC6 490 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 KRT12Q99456 494 aa23.24■■□□□ 1.31
TRIM54-202ENST00000380075 CCDC66A2RUB6 948 aa23.23■■□□□ 1.31
TRIM54-202ENST00000380075 GOLGA6BA6NDN3 693 aa23.23■■□□□ 1.31
TRIM54-202ENST00000380075 ANKRD63C9JTQ0 380 aa23.23■■□□□ 1.31
TRIM54-202ENST00000380075 SLC25A27O95847 323 aa23.23■■□□□ 1.31
TRIM54-202ENST00000380075 SYF2O95926 243 aaKnown RBP23.23■■□□□ 1.31
TRIM54-202ENST00000380075 ICAM3P32942 547 aa23.23■■□□□ 1.31
TRIM54-202ENST00000380075 MFAP3P55082 362 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms