RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 MIS18BP1Q6P0N0 1132 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 TRAPPC11Q7Z392 1133 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 VPS36Q86VN1 386 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 C4orf19Q8IY42 314 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 TMEM130Q8N3G9 435 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 SLC7A3Q8WY07 619 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 RABGGTAQ92696 567 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 SLC10A4Q96EP9 437 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 OSBPL9Q96SU4 736 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 TARS2Q9BW92 718 aaKnown RBP11.66□□□□□ -0.54
NEDD9-201ENST00000379433 TSGA10Q9BZW7 698 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 PORCNQ9H237 461 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 IGSF5Q9NSI5 407 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 ETAA1Q9NY74 926 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 SEL1LQ9UBV2 794 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 TRPC6Q9Y210 931 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 JRKLQ9Y4A0 524 aa11.66□□□□□ -0.54
NEDD9-201ENST00000379433 ZSCAN5CA6NGD5 496 aaPredicted RBP11.65□□□□□ -0.54
NEDD9-201ENST00000379433 CYP26A1O43174 497 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 CEP104O60308 925 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 H2AFXP16104 143 aaPredicted RBP11.65□□□□□ -0.54
NEDD9-201ENST00000379433 RRM1P23921 792 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 SFNP31947 248 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 TCF7P36402 384 aaPredicted RBP11.65□□□□□ -0.54
NEDD9-201ENST00000379433 ALDH5A1P51649 535 aaPredicted RBP11.65□□□□□ -0.54
NEDD9-201ENST00000379433 ZNF131P52739 623 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 AMPD2Q01433 879 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 KCTD2Q14681 263 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 LONRF2Q1L5Z9 754 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 RSRC2Q7L4I2 434 aaKnown RBP11.65□□□□□ -0.54
NEDD9-201ENST00000379433 SLC30A5Q8TAD4 765 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 DEPTORQ8TB45 409 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 SIX2Q9NPC8 291 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 LUC7LQ9NQ29 371 aaKnown RBP11.65□□□□□ -0.54
NEDD9-201ENST00000379433 NAGPAQ9UK23 515 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 TMEM161BQ8NDZ6 487 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 TAS1R2Q8TE23 839 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 TMEM206Q9H813 350 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 PDE11AQ9HCR9 933 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 XPNPEP1Q9NQW7 623 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 DDX41Q9UJV9 622 aaKnown RBP11.65□□□□□ -0.54
NEDD9-201ENST00000379433 FER1L6Q2WGJ9 1857 aa11.65□□□□□ -0.54
NEDD9-201ENST00000379433 SOWAHBA6NEL2 793 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 ARIH2O95376 493 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 PAFAH1B1P43034 410 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 EMC2Q15006 297 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 WHAMMP3Q1A5X7 153 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 SAPCD2Q86UD0 394 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 KRT222Q8N1A0 295 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 GPRASP2Q96D09 838 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 BTBD6Q96KE9 485 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 FNBP1Q96RU3 617 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 LRRC1Q9BTT6 524 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 AZI2Q9H6S1 392 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 RNF19AQ9NV58 838 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 PFASO15067 1338 aa11.65□□□□□ -0.55
NEDD9-201ENST00000379433 TTLL13PA6NNM8 815 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 F8VZ95 297 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 K7ERI5 159 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 DDX3XO00571 662 aaKnown RBP eCLIP11.64□□□□□ -0.55
NEDD9-201ENST00000379433 ZNF211Q13398 564 aaPredicted RBP11.64□□□□□ -0.55
NEDD9-201ENST00000379433 BMT2Q1RMZ1 405 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 SCARA3Q6AZY7 606 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 LBX2Q6XYB7 198 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 PASD1Q8IV76 773 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 RPUSD2Q8IZ73 545 aaKnown RBP11.64□□□□□ -0.55
NEDD9-201ENST00000379433 HS6ST3Q8IZP7 471 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 TATDN2Q93075 761 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 SCLT1Q96NL6 688 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 TRIM31Q9BZY9 425 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 ATP6V0A4Q9HBG4 840 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 APEX2Q9UBZ4 518 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 SNX12Q9UMY4 172 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 FAN1Q9Y2M0 1017 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 LTBP3Q9NS15 1303 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 SSC5DA1L4H1 1573 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 STAT5BP51692 787 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 GALCP54803 685 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 STRN3Q13033 797 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 RHPN2Q8IUC4 686 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 NEK9Q8TD19 979 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 SEMA4DQ92854 862 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 YIPF2Q9BWQ6 316 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 TLR10Q9BXR5 811 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 TMEM117Q9H0C3 514 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 FBXO40Q9UH90 709 aa11.64□□□□□ -0.55
NEDD9-201ENST00000379433 SLC16A3O15427 465 aaKnown RBP11.63□□□□□ -0.55
NEDD9-201ENST00000379433 N4BP1O75113 896 aaKnown RBP11.63□□□□□ -0.55
NEDD9-201ENST00000379433 EIF3JO75822 258 aaKnown RBP11.63□□□□□ -0.55
NEDD9-201ENST00000379433 H2AFZP0C0S5 128 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 ATP4AP20648 1035 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 SOX5P35711 763 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 GJC1P36383 396 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 ASTE1Q2TB18 679 aaPredicted RBP11.63□□□□□ -0.55
NEDD9-201ENST00000379433 H2AFVQ71UI9 128 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 DPH6Q7L8W6 267 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 SLC47A2Q86VL8 602 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 ASAP3Q8TDY4 903 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 C17orf50Q8WW18 174 aa11.63□□□□□ -0.55
NEDD9-201ENST00000379433 SPATA33Q96N06 139 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms