RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 PRKCQQ04759 706 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 MIGA2Q7L4E1 593 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 NSUN7Q8NE18 718 aaKnown RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 PHKG2P15735 406 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 GGCXP38435 758 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ANKRD40Q6AI12 368 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 MLXIPLQ9NP71 852 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 OLFML3Q9NRN5 406 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 MAP3K20Q9NYL2 800 aaKnown RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ZFATQ9P243 1243 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 FBXO2Q9UK22 296 aaPredicted RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 MAP1BP46821 2468 aaKnown RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 RALAP11233 206 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ADD2P35612 726 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 VEPH1Q14D04 833 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 CDKL3Q8IVW4 592 aaPredicted RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ZBED8Q8IZ13 594 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 NUP93Q8N1F7 819 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 BHMT2Q9H2M3 363 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 SYNDIG1Q9H7V2 258 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 NCALDP61601 193 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 DDX53Q86TM3 631 aaKnown RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 PPP1R36Q96LQ0 422 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ASNSP08243 561 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 PSMA3P25788 255 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 TRADDQ15628 312 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 PARP9Q8IXQ6 854 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 TSPAN17Q96FV3 270 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 MYH7BA7E2Y1 1941 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 PTPN21Q16825 1174 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 RHPN2Q8IUC4 686 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 TADA1Q96BN2 335 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 HEMGNQ9BXL5 484 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ASCC2Q9H1I8 757 aaPredicted RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 SEPT3Q9UH03 358 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ADAMTS1Q9UHI8 967 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 LRRC53A6NM62 1247 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 PRELPP51888 382 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 TBL3Q12788 808 aaKnown RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 DEFA1P59665 94 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 DEFA3P59666 94 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 RAB14P61106 215 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ANGPT1Q15389 498 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 FAM102AQ5T9C2 384 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 OSBPL10Q9BXB5 764 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 USP17L8P0C7I0 530 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 TTLL4Q14679 1199 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 KYAT1Q16773 422 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 UNC13DQ70J99 1090 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 PODNQ7Z5L7 613 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 GOLGA8RI6L899 631 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ZNF197O14709 1029 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ZNF589Q86UQ0 364 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ARMC2Q8NEN0 867 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 MRPL4Q9BYD3 311 aaKnown RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 MRPS26Q9BYN8 205 aaKnown RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 BFARQ9NZS9 450 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ARL4DP49703 201 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 YIPF2Q9BWQ6 316 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 FAM129AQ9BZQ8 928 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ABCB6Q9NP58 842 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 HMOX2P30519 316 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 PPP3CCP48454 512 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 HSD17B4P51659 736 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 AP3B2Q13367 1082 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 BTNL9Q6UXG8 535 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 RUBCNQ92622 972 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.16□□□□□ -0.31e-6■□□□□ 10.9
VPS13A-204ENST00000376634 C6orf203Q9P0P8 240 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 PTPRTO14522 1441 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 GGPS1O95749 300 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 SERPIND1P05546 499 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 TMED10P49755 219 aaKnown RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 PMS2P54278 862 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 GFPT1Q06210 699 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 HDDC2Q7Z4H3 204 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 LUZP2Q86TE4 346 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 UNC45AQ9H3U1 944 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 VIRMAQ69YN4 1812 aaKnown RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 PTCH1Q13635 1447 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 LGALS16A8MUM7 142 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 TOMM70O94826 608 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 LAMB3Q13751 1172 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ASAP3Q8TDY4 903 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 CEP95Q96GE4 821 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 DNAJC12Q9UKB3 198 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ARHGEF40Q8TER5 1519 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 RUNX1T1Q06455 604 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 TMEM179Q6ZVK1 233 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 PGBD4Q96DM1 585 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 HSPBP1Q9NZL4 362 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ADCY10Q96PN6 1610 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 BICRAQ9NZM4 1560 aa13.16□□□□□ -0.3
VPS13A-204ENST00000376634 RPAP1Q9BWH6 1393 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-204ENST00000376634 ZC3H4Q9UPT8 1303 aaKnown RBP13.15□□□□□ -0.3
VPS13A-204ENST00000376634 KIF23Q02241 960 aaPredicted RBP13.15□□□□□ -0.3
VPS13A-204ENST00000376634 STAMBPL1Q96FJ0 436 aa13.15□□□□□ -0.3
VPS13A-204ENST00000376634 OSBPL9Q96SU4 736 aa13.15□□□□□ -0.3
VPS13A-204ENST00000376634 POLR3FQ9H1D9 316 aaPredicted RBP13.15□□□□□ -0.3
VPS13A-204ENST00000376634 ZNF302Q9NR11 478 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms