RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TRMT10CQ7L0Y3 403 aaKnown RBP12.14□□□□□ -0.47
PTPRF-203ENST00000372407 LCA5Q86VQ0 697 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 STAP1Q9ULZ2 295 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 PLEKHG2Q9H7P9 1386 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 PI4K2BG5E9Z4 385 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 CDR2Q01850 454 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 MKRN3Q13064 507 aaKnown RBP12.14□□□□□ -0.47
PTPRF-203ENST00000372407 ZBTB17Q13105 803 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 IZUMO3Q5VZ72 239 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 PHF20Q9BVI0 1012 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 GABBR1Q9UBS5 961 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 COPS2P61201 443 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 STAT4Q14765 748 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 LRRC14Q15048 493 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 CEP55Q53EZ4 464 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 ZBED8Q8IZ13 594 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 TC2NQ8N9U0 490 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 ZC3H15Q8WU90 426 aaKnown RBP12.14□□□□□ -0.47
PTPRF-203ENST00000372407 SAAL1Q96ER3 474 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 C2orf40Q9H1Z8 148 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.14□□□□□ -0.47
PTPRF-203ENST00000372407 TNS2Q63HR2 1409 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 FDX1P10109 184 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 PYGBP11216 843 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 DPYDQ12882 1025 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 MORF4L2Q15014 288 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.14□□□□□ -0.47
PTPRF-203ENST00000372407 FOXP2O15409 715 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 HUS1O60921 280 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 AKR1B1P15121 316 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 GUCY1A3Q02108 690 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 ACTN3Q08043 901 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 HP1BP3Q5SSJ5 553 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 SNRNP48Q6IEG0 339 aaKnown RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 PRR5LQ6MZQ0 368 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 CCNI2Q6ZMN8 369 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 NUDCD3Q8IVD9 361 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 ATL2Q8NHH9 583 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 C1orf54Q8WWF1 131 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 AGPAT1Q99943 283 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 DDX56Q9NY93 547 aaKnown RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 FAM205CA6NFA0 338 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 MEFVO15553 781 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 CAMTA2O94983 1202 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 SCP2P22307 547 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 ARPP19P56211 112 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 HEATR6Q6AI08 1181 aaKnown RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 SWSAP1Q6NVH7 229 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 USP49Q70CQ1 688 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 C7orf25Q9BPX7 421 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 ANLNQ9NQW6 1124 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 LRFN2Q9ULH4 789 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 TRIM33Q9UPN9 1127 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 NOP14P78316 857 aaKnown RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 STK4Q13043 487 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 KIF19Q2TAC6 998 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 KIAA1755Q5JYT7 1200 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 POTEAQ6S8J7 498 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 NSUN4Q96CB9 384 aaKnown RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 ZBTB18Q99592 522 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 MTRQ99707 1265 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 PLA2G12BQ9BX93 195 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 TRIM15Q9C019 465 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 MRPL40Q9NQ50 206 aaKnown RBP12.13□□□□□ -0.47
PTPRF-203ENST00000372407 AGPAT5Q9NUQ2 364 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 INPP5FQ9Y2H2 1132 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 ZNF609O15014 1411 aa12.13□□□□□ -0.47
PTPRF-203ENST00000372407 CHGBP05060 677 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 CIITAP33076 1130 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 GPC3P51654 580 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 YWHAHQ04917 246 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 NCAPHQ15003 741 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 RAD9BQ6WBX8 426 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 SPDYE1Q8NFV5 336 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 SMYD3Q9H7B4 428 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 RBAKQ9NYW8 714 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 PNMA3Q9UL41 463 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 F8W8V4 182 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 MDH1P40925 334 aaKnown RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 GPSM2P81274 684 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 SPP2Q13103 211 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 DUOXA2Q1HG44 320 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 COL23A1Q86Y22 540 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 CCNYL1Q8N7R7 359 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 EXT2Q93063 718 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 HPS3Q969F9 1004 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 FAM8A1Q9UBU6 413 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 AGO2Q9UKV8 859 aaKnown RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 PCDHA10Q9Y5I2 948 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 PLSCR1O15162 318 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 RTN2O75298 545 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 CDH16O75309 829 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 AGTP01019 485 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 EEF1DP29692 281 aaKnown RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 GALCP54803 685 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 LRRC23Q53EV4 343 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 STK33Q9BYT3 514 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 MAGEB5Q9BZ81 275 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 ZHX2Q9Y6X8 837 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 CCDC22O60826 627 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms