RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 SLF1Q9BQI6 1058 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 ZMYND12Q9H0C1 365 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 LMBRD1Q9NUN5 540 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 TMOD4Q9NZQ9 345 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 CCDC39Q9UFE4 941 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 SEC63Q9UGP8 760 aaKnown RBP4.03□□□□□ -1.76
MCF2-202ENST00000370573 PCDHA6Q9UN73 950 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 ADAMTS5Q9UNA0 930 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 POLR3KQ9Y2Y1 108 aaPredicted RBP4.03□□□□□ -1.76
MCF2-202ENST00000370573 PCDHA8Q9Y5H6 950 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 PCDHA1Q9Y5I3 950 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 CLIC4Q9Y696 253 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 U3KQE9 123 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 ESYT2A0FGR8 921 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 PRAMEF27A3QJZ7 478 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 RBAK-RBAKDNI3L0D1 243 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 EDIL3O43854 480 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 PEX10O60683 326 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 FLOT1O75955 427 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 XBP1P17861 261 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 CALML3P27482 149 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 GNALP38405 381 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 RPS26P62854 115 aaKnown RBP4.03□□□□□ -1.77
MCF2-202ENST00000370573 ERVK-24P63145 666 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 CYP27A1Q02318 531 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 CEBPZQ03701 1054 aaKnown RBP4.03□□□□□ -1.77
MCF2-202ENST00000370573 BIRC2Q13490 618 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 MPP2Q14168 576 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 COG2Q14746 738 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 SAFBQ15424 915 aaKnown RBP eCLIP4.03□□□□□ -1.77
MCF2-202ENST00000370573 USH1GQ495M9 461 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 FOXB2Q5VYV0 432 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 GADL1Q6ZQY3 521 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 BRAPQ7Z569 592 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 RNF180Q86T96 592 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 TP53INP2Q8IXH6 220 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 BLIDQ8IZY5 108 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 RBBP8NLQ8NC74 664 aaPredicted RBP4.03□□□□□ -1.77
MCF2-202ENST00000370573 RNF214Q8ND24 703 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 ATG4CQ96DT6 458 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 CEP89Q96ST8 783 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 AMNQ9BXJ7 453 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 SLC38A10Q9HBR0 1119 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 RCOR1Q9UKL0 485 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 PCOLCE2Q9UKZ9 415 aa4.03□□□□□ -1.77
MCF2-202ENST00000370573 TRPM7Q96QT4 1865 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PARP14Q460N5 1801 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 hCG_1984214I3L0E3 225 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 VWA5AO00534 786 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 MEIS2O14770 477 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 HOXA7P31268 230 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 ZNF165P49910 485 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ADCY7P51828 1080 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 HUNKP57058 714 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PTPAQ15257 358 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 UBE2SQ16763 222 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 JAKMIP3Q5VZ66 844 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 GALNT17Q6IS24 598 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 USP17L6PQ6QN14 398 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PIK3AP1Q6ZUJ8 805 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 APBB1IPQ7Z5R6 666 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 FAM178BQ8IXR5 827 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 REXO1Q8N1G1 1221 aaKnown RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 ZNF713Q8N859 430 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 CCDC148Q8NFR7 591 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 LEO1Q8WVC0 666 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 CLEC4DQ8WXI8 215 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 BRI3BPQ8WY22 251 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 NINJ1Q92982 152 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ELMO3Q96BJ8 720 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 GBP4Q96PP9 640 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 DUSP23Q9BVJ7 150 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 MIR1-1HGQ9H1L0 117 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PSTPIP2Q9H939 334 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 RAVER2Q9HCJ3 691 aaKnown RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 C6orf50Q9HD87 102 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 RIC8AQ9NPQ8 531 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 RTEL1Q9NZ71 1219 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PLAAQ9Y263 795 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 RIPK3Q9Y572 518 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PCDHB14Q9Y5E9 798 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ATP6V1DQ9Y5K8 247 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 FIBPO43427 364 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 TSPAN6O43657 245 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 CREB3O43889 395 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ZBED4O75132 1171 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 CNMDO75829 334 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ICAM1P05362 532 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 KRT85P78386 507 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 NFKB2Q00653 900 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 SNAPC2Q13487 334 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 TMEM132BQ14DG7 1078 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 LRRC14Q15048 493 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 MUM1L1Q5H9M0 696 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ANO1Q5XXA6 986 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 STRA8Q7Z7C7 330 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 SAPCD2Q86UD0 394 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 CPXCR1Q8N123 301 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PLD6Q8N2A8 252 aaKnown RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 TOP6BLQ8N6T0 577 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms