RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 PKN3Q6P5Z2 889 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 GPR141Q7Z602 305 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 FAM45AQ8TCE6 357 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 NUP85Q9BW27 656 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 RANBP17Q9H2T7 1088 aaKnown RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 HPS5Q9UPZ3 1129 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 UBA6A0AVT1 1052 aaPredicted RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CYTH3O43739 400 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 ALBP02768 609 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SF3B3Q15393 1217 aaKnown RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 TBCKQ8TEA7 893 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 FAM162AQ96A26 154 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 MRPL48Q96GC5 212 aaKnown RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SLC7A5P2Q9GIP4 190 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 PCIF1Q9H4Z3 704 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 C20orf96Q9NUD7 363 aaPredicted RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 NDFIP2Q9NV92 336 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 ARIH1Q9Y4X5 557 aaPredicted RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 C11orf88Q6PI97 169 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 INPP5DQ92835 1189 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 OSBPP22059 807 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 MICU2Q8IYU8 434 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 TMEM35BQ8NCS4 154 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CCDC17Q96LX7 622 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SLC52A2Q9HAB3 445 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SLC9A2Q9UBY0 812 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 IP6K2Q9UHH9 426 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 PCDHB8Q9UN66 801 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SORBS3O60504 671 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SGSM3Q96HU1 749 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 MLXIPLQ9NP71 852 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 KRT84Q9NSB2 600 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 NDUFB9Q9Y6M9 179 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 BNIP3LO60238 219 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SP110Q9HB58 689 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SMARCAL1Q9NZC9 954 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 MLH3Q9UHC1 1453 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 ARHGEF6Q15052 776 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 ZNF699Q32M78 642 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 MSTO1Q9BUK6 570 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 RAD21L1Q9H4I0 556 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CNOT8Q9UFF9 292 aaKnown RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CYP27A1Q02318 531 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 VPS37AQ8NEZ2 397 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 IL17RAQ96F46 866 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 ADAMTS1Q9UHI8 967 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CRYMQ14894 314 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 TLR2O60603 784 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 NT5C2P49902 561 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 GYS2P54840 703 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 UGP2Q16851 508 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 SGSM1Q2NKQ1 1148 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 C19orf18Q8NEA5 215 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 ARL8AQ96BM9 186 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 EXOSC4Q9NPD3 245 aaKnown RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 MYH6P13533 1939 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 MB21D1Q8N884 522 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 KLHL25Q9H0H3 589 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CDYLQ9Y232 598 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 PRKG1Q13976 671 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CHMP1BQ7LBR1 199 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 TTC7AQ9ULT0 858 aaPredicted RBP9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CDY2AQ9Y6F7 541 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 CDY1Q9Y6F8 540 aa9.8□□□□□ -0.84
VPS13A-203ENST00000360280 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 KRT6BP04259 564 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 KRT6CP48668 564 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 SLFN13Q68D06 897 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 ZNF564Q8TBZ8 553 aaPredicted RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 DDX17Q92841 729 aaKnown RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 ZBED2Q9BTP6 218 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 UNC45AQ9H3U1 944 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 SH3GLB2Q9NR46 395 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 A2MP01023 1474 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 EIF4E1BA6NMX2 242 aaKnown RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 PPIP5K2O43314 1243 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 CLASP2O75122 1294 aaKnown RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 NPM3O75607 178 aaKnown RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 PURAQ00577 322 aaKnown RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 TRIP10Q15642 601 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 Q3C1V9 767 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 GIMAP8Q8ND71 665 aaPredicted RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 SRPK1Q96SB4 655 aaKnown RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 RPAP3Q9H6T3 665 aaPredicted RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 TOPORSQ9NS56 1045 aaPredicted RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 SAMSN1Q9NSI8 373 aaKnown RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 FAM187AA6NFU0 413 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 KLHL12Q53G59 568 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 RWDD3Q9Y3V2 267 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 USP19O94966 1318 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 PDE5AO76074 875 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 P3H1Q32P28 736 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 RHOT1Q8IXI2 618 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 FHDC1Q9C0D6 1143 aaPredicted RBP9.79□□□□□ -0.84
VPS13A-203ENST00000360280 TRIM24O15164 1050 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 HUS1O60921 280 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 CDH16O75309 829 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 LRRC36Q1X8D7 754 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 NEK10Q6ZWH5 1172 aa9.79□□□□□ -0.84
VPS13A-203ENST00000360280 LRRC39Q96DD0 335 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms