RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 CCDC124Q96CT7 223 aaKnown RBP16.52■□□□□ 0.24
PTPRF-201ENST00000359947 C19orf81C9J6K1 198 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 GRAP2O75791 330 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 TPI1P60174 286 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 TMEM132DQ14C87 1099 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 SRRM1Q8IYB3 904 aaKnown RBP16.52■□□□□ 0.24
PTPRF-201ENST00000359947 SRBD1Q8N5C6 995 aaKnown RBP16.52■□□□□ 0.24
PTPRF-201ENST00000359947 DDX50Q9BQ39 737 aaKnown RBP16.52■□□□□ 0.24
PTPRF-201ENST00000359947 EFHD1Q9BUP0 239 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 TRAIPQ9BWF2 469 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 MLXIPLQ9NP71 852 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 CYP26B1Q9NR63 512 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 GUCY1A2P33402 732 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 NNTQ13423 1086 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 IP6K2Q9UHH9 426 aa16.52■□□□□ 0.24
PTPRF-201ENST00000359947 E2F6O75461 281 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 KRT37O76014 449 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 AKT1P31749 480 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 COBLL1Q53SF7 1204 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 C12orf60Q5U649 245 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 EFCAB12Q6NXP0 572 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 AIPL1Q9NZN9 384 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 MID2Q9UJV3 735 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 FCGRTP55899 365 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 CYTH2Q99418 400 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 MED4Q9NPJ6 270 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 L3MBTL1Q9Y468 752 aa16.52■□□□□ 0.23
PTPRF-201ENST00000359947 THPOP40225 353 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 RABGGTAQ92696 567 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 SENP1Q9P0U3 644 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 CYP26A1O43174 497 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 L3MBTL3Q96JM7 780 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-201ENST00000359947 PRDM15P57071 1507 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-201ENST00000359947 SYTL3Q4VX76 610 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 C9orf131Q5VYM1 1079 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 RNF180Q86T96 592 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 SLC26A7Q8TE54 656 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 GIPC2Q8TF65 315 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 MTMR4Q9NYA4 1195 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 RPSAP08865 295 aaKnown RBP16.51■□□□□ 0.23
PTPRF-201ENST00000359947 FDX1P10109 184 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 SMYD3Q9H7B4 428 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 SLC30A5Q8TAD4 765 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 TSPYL2Q9H2G4 693 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-201ENST00000359947 MBD5Q9P267 1494 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 CYP2C9P11712 490 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 USP11P51784 963 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 EFNA5P52803 228 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 GTF2H3Q13889 308 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 PCSK7Q16549 785 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 GLB1LQ6UWU2 654 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 DDIASQ8IXT1 998 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 NEDD1Q8NHV4 660 aa16.51■□□□□ 0.23
PTPRF-201ENST00000359947 NCK2O43639 380 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 MFAP3LO75121 409 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 ESRRAP11474 423 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-201ENST00000359947 DGKDQ16760 1214 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 FASTKD1Q53R41 847 aaKnown RBP16.5■□□□□ 0.23
PTPRF-201ENST00000359947 GAS2L3Q86XJ1 694 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 PABPC5Q96DU9 382 aaKnown RBP16.5■□□□□ 0.23
PTPRF-201ENST00000359947 PRG3Q9Y2Y8 225 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-201ENST00000359947 APBA1Q02410 837 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 AGBL1Q96MI9 1066 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 TRIM54Q9BYV2 358 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 GOLPH3LQ9H4A5 285 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 FAM49BQ9NUQ9 324 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 SDE2Q6IQ49 451 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 PROM2Q8N271 834 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 TTC13Q8NBP0 860 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 CPA5Q8WXQ8 436 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 KLK14Q9P0G3 267 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 DDHD2O94830 711 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 ALDH1A3P47895 512 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 HSD17B4P51659 736 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 CHRNA3P32297 505 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 CPSF1Q10570 1443 aaKnown RBP16.5■□□□□ 0.23
PTPRF-201ENST00000359947 RASA4BC9J798 803 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 RASA4O43374 803 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 MB21D2Q8IYB1 491 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-201ENST00000359947 PANX2Q96RD6 677 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 APOL1O14791 398 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 AMHR2Q16671 573 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 EFHBQ8N7U6 833 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 LPAR1Q92633 364 aa16.5■□□□□ 0.23
PTPRF-201ENST00000359947 SPATA31A1Q5TZJ5 1347 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 EPHA7Q15375 998 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 SH3TC2Q8TF17 1288 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 C1orf54Q8WWF1 131 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 SEPT1Q8WYJ6 367 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 ENTPD7Q9NQZ7 604 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 PRR12Q9ULL5 1215 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 SYNGAP1Q96PV0 1343 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 ZSCAN9O15535 394 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-201ENST00000359947 TWF1Q12792 350 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 PPARGC1AQ9UBK2 798 aaKnown RBP16.49■□□□□ 0.23
PTPRF-201ENST00000359947 ABCC3O15438 1527 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 KRT7P08729 469 aa16.49■□□□□ 0.23
PTPRF-201ENST00000359947 ALDH7A1P49419 539 aaKnown RBP16.49■□□□□ 0.23
PTPRF-201ENST00000359947 NLRP11P59045 1033 aaKnown RBP16.49■□□□□ 0.23
PTPRF-201ENST00000359947 KRT17Q04695 432 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms