RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ZBTB5O15062 677 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CALCAP01258 141 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 SCP2P22307 547 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CHMP1BQ7LBR1 199 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 SEPT8Q92599 483 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 KLHL29Q96CT2 875 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 COPRSQ9NQ92 184 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 TMEM161AQ9NX61 479 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 PASKQ96RG2 1323 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CYBBP04839 570 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 VAC14Q08AM6 782 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CDC16Q13042 620 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ITPRIPL1Q6GPH6 555 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 DPF2Q92785 391 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 HAUS4Q9H6D7 363 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 NARFQ9UHQ1 456 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 SRPRBQ9Y5M8 271 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 DDX3XO00571 662 aaKnown RBP eCLIP7.8□□□□□ -1.161e-11■□□□□ 8.8
VPS13A-202ENST00000357409 CTNND1O60716 968 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 LRG1P02750 347 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CLCN3P51790 818 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 TMED1Q13445 227 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 SLC39A14Q15043 492 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 KCNT1Q5JUK3 1230 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 RASSF3Q86WH2 238 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CHSY1Q86X52 802 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 SRRM1Q8IYB3 904 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 PLEKHF1Q96S99 279 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 DDX47Q9H0S4 455 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 PPARGC1AQ9UBK2 798 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 LRRC53A6NM62 1247 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ATP6V1E1P36543 226 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 KPNA1P52294 538 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 COL23A1Q86Y22 540 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ENOX1Q8TC92 643 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 DTX3LQ8TDB6 740 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 INPP5DQ92835 1189 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 NCAM1P13591 858 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 KCNA2P16389 499 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ACAT1P24752 427 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 GPS1Q13098 491 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ZNF235Q14590 738 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 DLK2Q6UY11 383 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 TOGARAM2Q6ZUX3 1019 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 FBXO16Q8IX29 292 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 RNF26Q9BY78 433 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 FOXP1Q9H334 677 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 IMPACTQ9P2X3 320 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 SLC9A2Q9UBY0 812 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 STRIP2Q9ULQ0 834 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 AURKCQ9UQB9 309 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 WDR62O43379 1518 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 TMEM150BA6NC51 233 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 SERPING1P05155 500 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ALDH1A3P47895 512 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 KCNJ1P48048 391 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 RPS6P62753 249 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 PDIA2Q13087 525 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 E2F4Q16254 413 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 FAM167BQ9BTA0 163 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 MRPL4Q9BYD3 311 aaKnown RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 TOPORSQ9NS56 1045 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 MAP3K1Q13233 1512 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 H0Y626 953 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 DEUP1Q05D60 604 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 COG2Q14746 738 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TJAP1Q5JTD0 557 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 MARK2Q7KZI7 788 aaKnown RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 MAP3K20Q9NYL2 800 aaKnown RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 RPRD2Q5VT52 1461 aaKnown RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 A0A1B0GUA9 196 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 CAVIN2O95810 425 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 PDHA1P08559 390 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 C10orf120Q5SQS8 335 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 PKN3Q6P5Z2 889 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 LVRNQ6Q4G3 990 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 NDUFAF2Q8N183 169 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 SLC17A8Q8NDX2 589 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 CLIP3Q96DZ5 547 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 CHP1Q99653 195 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 VCXQ9H320 206 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 NAGPAQ9UK23 515 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 IQGAP2Q13576 1575 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 APRTP07741 180 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 FNTAP49354 379 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TRIM32Q13049 653 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 FBXW10Q5XX13 1052 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 ACAD9Q9H845 621 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 ABCB6Q9NP58 842 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 FBXO10Q9UK96 956 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 HEATR6Q6AI08 1181 aaKnown RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 APOBEC3FQ8IUX4 373 aaKnown RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 OR2W6PQ8NHA6 318 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 DCUN1D1Q96GG9 259 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TRAIPQ9BWF2 469 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TSPYL2Q9H2G4 693 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 CPDO75976 1380 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 PHKA2P46019 1235 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms