RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 H0YIN7 160 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 PHF2O75151 1096 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 TRABDQ9H4I3 376 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 A2ML1A8K2U0 1454 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 PLEKHG2Q9H7P9 1386 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 A8MXQ7 604 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 TTKP33981 857 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 RXRGP48443 463 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 TBC1D19Q8N5T2 526 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 CYFIP2Q96F07 1278 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 IL17RAQ96F46 866 aa14.04□□□□□ -0.16
COL6A3-202ENST00000347401 E5RI56 91 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 EIF4A1P60842 406 aaKnown RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 LVRNQ6Q4G3 990 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 CPXCR1Q8N123 301 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 FAM20AQ96MK3 541 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 TYK2P29597 1187 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 WDR93Q6P2C0 686 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 G2E3Q7L622 706 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 RCOR2Q8IZ40 523 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 FAM149B1Q96BN6 582 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 FOPNLQ96NB1 174 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 PRMT1Q99873 361 aaKnown RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 LMCD1Q9NZU5 365 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 WDR35Q9P2L0 1181 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 A0A1W2PQJ5 194 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 STX5Q13190 355 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 CALML6Q8TD86 181 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 STX7O15400 261 aaKnown RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 MIGA2Q7L4E1 593 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 GCNAQ96QF7 691 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 PTPRKQ15262 1439 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 TRPC5OSA6NMA1 111 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 ABCB5Q2M3G0 1257 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 TBCKQ8TEA7 893 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 CNOT8Q9UFF9 292 aaKnown RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 PCDHB8Q9UN66 801 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 RNF17Q9BXT8 1623 aaKnown RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 ANKARQ7Z5J8 1434 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 FRMPD1Q5SYB0 1578 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 KPNA4O00629 521 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 RTN2O75298 545 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 TFAMQ00059 246 aaKnown RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 DLGAP5Q15398 846 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 SMCR8Q8TEV9 937 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 NSL1Q96IY1 281 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 PALD1Q9ULE6 856 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 K7ERI5 159 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 PSMD14O00487 310 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 ALBP02768 609 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 ACTN3Q08043 901 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-202ENST00000347401 CATSPER3Q86XQ3 398 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 MAPKAPK5Q8IW41 473 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 HIPK4Q8NE63 616 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 RBBP8Q99708 897 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 CD209Q9NNX6 404 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 CDYLQ9Y232 598 aa14.03□□□□□ -0.16
COL6A3-202ENST00000347401 ADAMTS2O95450 1211 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 ZFP1Q6P2D0 407 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 TRAPPC11Q7Z392 1133 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 CLEC4FQ8N1N0 589 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 EAF2Q96CJ1 260 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-202ENST00000347401 TOPORSQ9NS56 1045 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-202ENST00000347401 FKBP6O75344 327 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 WASHC5Q12768 1159 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 FAM83BQ5T0W9 1011 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 FAM160B2Q86V87 743 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 NLRP10Q86W26 655 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 VPS37AQ8NEZ2 397 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 SH3GL1Q99961 368 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 SLC9A2Q9UBY0 812 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 SLC4A7Q9Y6M7 1214 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 GNPATO15228 680 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 NR3C1P04150 777 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 EPHB1P54762 984 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 DYNLT1P63172 113 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 PIGHQ14442 188 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-202ENST00000347401 NIM1KQ8IY84 436 aa14.02□□□□□ -0.16
COL6A3-202ENST00000347401 PDE5AO76074 875 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 DGKHQ86XP1 1220 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 RNPC3Q96LT9 517 aaKnown RBP14.02□□□□□ -0.17
COL6A3-202ENST00000347401 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.02□□□□□ -0.17
COL6A3-202ENST00000347401 SLC18A3Q16572 532 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 CYFIP1Q7L576 1253 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 APOL4Q9BPW4 351 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 RAD21L1Q9H4I0 556 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 PAPOLBQ9NRJ5 636 aaKnown RBP14.02□□□□□ -0.17
COL6A3-202ENST00000347401 RHOBTB1O94844 696 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 KLHL12Q53G59 568 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 RAPGEF5Q92565 580 aa14.02□□□□□ -0.17
COL6A3-202ENST00000347401 ZNF197O14709 1029 aa14.01□□□□□ -0.17
COL6A3-202ENST00000347401 ADD2P35612 726 aa14.01□□□□□ -0.17
COL6A3-202ENST00000347401 NUP62P37198 522 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-202ENST00000347401 ZNF667Q5HYK9 610 aa14.01□□□□□ -0.17
COL6A3-202ENST00000347401 ASAP3Q8TDY4 903 aa14.01□□□□□ -0.17
COL6A3-202ENST00000347401 FAM167BQ9BTA0 163 aa14.01□□□□□ -0.17
COL6A3-202ENST00000347401 NAT9Q9BTE0 207 aa14.01□□□□□ -0.17
COL6A3-202ENST00000347401 ZWILCHQ9H900 591 aa14.01□□□□□ -0.17
COL6A3-202ENST00000347401 LRCH1Q9Y2L9 728 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms