RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 LTBP3Q9NS15 1303 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 USP17L10C9JJH3 530 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 CA8P35219 290 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 VHLP40337 213 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 MGAT5Q09328 741 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 ASPRV1Q53RT3 343 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 PPP4R3CPQ6ZMV5 832 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 INPP4AQ96PE3 977 aaPredicted RBP12.69□□□□□ -0.38
RTN3-203ENST00000341307 IDI2Q9BXS1 227 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 ARHGEF38Q9NXL2 777 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 PI4KBQ9UBF8 816 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 GRID2IPA4D2P6 1211 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 TCP10L2B9ZVM9 353 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 ENTPD5O75356 428 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 SUN1O94901 812 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 SKIP12755 728 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 SESN3P58005 492 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 RNASE9P60153 205 aaKnown RBP12.69□□□□□ -0.38
RTN3-203ENST00000341307 OCRLQ01968 901 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 CLPPQ16740 277 aaPredicted RBP12.69□□□□□ -0.38
RTN3-203ENST00000341307 CYP4X1Q8N118 509 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 TBCKQ8TEA7 893 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 RSPH1Q8WYR4 309 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 ABHD8Q96I13 439 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 NR1H4Q96RI1 486 aaPredicted RBP12.69□□□□□ -0.38
RTN3-203ENST00000341307 FGFR1OP2Q9NVK5 253 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 ZNF180Q9UJW8 692 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 TMEM59LQ9UK28 342 aa12.69□□□□□ -0.38
RTN3-203ENST00000341307 HTR3EA5X5Y0 456 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 O00370 1275 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 LSM1O15116 133 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 MAGEB3O15480 346 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 ATP9BO43861 1147 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 UBTFL6P0CB48 400 aaPredicted RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 GNA11P29992 359 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 FKBP1AP62942 108 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 RRP1BQ14684 758 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 NONOQ15233 471 aaKnown RBP eCLIP12.68□□□□□ -0.38
RTN3-203ENST00000341307 UBE2SQ16763 222 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 USH1GQ495M9 461 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 SLC44A4Q53GD3 710 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 PDXDC2PQ6P474 469 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 DTHD1Q6ZMT9 781 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 FAM47EQ6ZV65 393 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 NANOGNBQ7Z5D8 188 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 SIAH1Q8IUQ4 282 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 NIM1KQ8IY84 436 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 ANKRD13CQ8N6S4 541 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 ERMNQ8TAM6 284 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 SCG3Q8WXD2 468 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 CCDC42Q96M95 316 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 SRPK1Q96SB4 655 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 LRMDAQ9H2I8 198 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 NMRK2Q9NPI5 230 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 PRKAG3Q9UGI9 489 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 DDX25Q9UHL0 483 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 SCAF8Q9UPN6 1271 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 TMED5Q9Y3A6 229 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 BOLA2-SMG1P6H3BVE0 249 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 HGSO14964 777 aaPredicted RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 LYNP07948 512 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 DNA2P51530 1060 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 SNAP25P60880 206 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 SYDE2Q5VT97 1194 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 RRAGBQ5VZM2 374 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 ARL6IP4Q66PJ3 421 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 REXO1Q8N1G1 1221 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 CTNNBL1Q8WYA6 563 aaPredicted RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 MPHOSPH6Q99547 160 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 MRIQ9BWK5 157 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 DHX36Q9H2U1 1008 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 R3HDM2Q9Y2K5 976 aaKnown RBP12.68□□□□□ -0.38
RTN3-203ENST00000341307 ARL2BPQ9Y2Y0 163 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 MYH4Q9Y623 1939 aa12.68□□□□□ -0.38
RTN3-203ENST00000341307 A6NJR5 290 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 FZD9O00144 591 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 BUB1O43683 1085 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 ZCCHC18P0CG32 403 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 HARSP12081 509 aaKnown RBP12.67□□□□□ -0.38
RTN3-203ENST00000341307 SMARCA1P28370 1054 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 PAK1Q13153 545 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 SMUG1Q53HV7 270 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 SH3TC2Q8TF17 1288 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 LRRC15Q8TF66 581 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 CATSPER2Q96P56 530 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 MIS12Q9H081 205 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 DENND2DQ9H6A0 471 aaPredicted RBP12.67□□□□□ -0.38
RTN3-203ENST00000341307 ARHGAP20Q9P2F6 1191 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 ZNRF3Q9ULT6 936 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 MYO3BQ8WXR4 1341 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 IPO5O00410 1097 aaKnown RBP12.67□□□□□ -0.38
RTN3-203ENST00000341307 LCA5LO95447 670 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 ALDH2P05091 517 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 PYGMP11217 842 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 TAL1P17542 331 aaPredicted RBP12.67□□□□□ -0.38
RTN3-203ENST00000341307 TNNC1P63316 161 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 IFI35P80217 286 aaPredicted RBP12.67□□□□□ -0.38
RTN3-203ENST00000341307 LMNB2Q03252 620 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 WASHC2DQ5SRD0 308 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 SNX30Q5VWJ9 437 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms