RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 PPP2R5CQ13362 524 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 UAP1Q16222 522 aaPredicted RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 DSEQ9UL01 958 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 NOC2LQ9Y3T9 749 aaKnown RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 NHSQ6T4R5 1651 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 NFASCO94856 1347 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 PIK3CDO00329 1044 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 CAPN15O75808 1086 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 MOCS3O95396 460 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 MYBP10242 640 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 INSRRP14616 1297 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 MAPRE1Q15691 268 aaKnown RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 BTAF1O14981 1849 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 MYMKA6NI61 221 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 LGALS16A8MUM7 142 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 URODP06132 367 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 CASP1P29466 404 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 IKBKEQ14164 716 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 PPP2R5DQ14738 602 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 TRPC7Q9HCX4 862 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 SNX9Q9Y5X1 595 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 LGALS2P05162 132 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 KIZQ2M2Z5 673 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 CCDC144BQ3MJ40 725 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 AMIGO3Q86WK7 504 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 UBLCP1Q8WVY7 318 aaPredicted RBP10.87□□□□□ -0.67
USP54-201ENST00000339859 CCT6BQ92526 530 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 TRPV6Q9H1D0 765 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 RGS17Q9UGC6 210 aaPredicted RBP10.87□□□□□ -0.67
USP54-201ENST00000339859 MCF2LO15068 1137 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 RHOBTB3O94955 611 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 SLC12A2P55011 1212 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 DNAJB3Q8WWF6 145 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 LMCD1Q9NZU5 365 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 NRCAMQ92823 1304 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 BEX3Q00994 111 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 PAN2Q504Q3 1202 aaKnown RBP10.87□□□□□ -0.67
USP54-201ENST00000339859 RWDD4Q6NW29 188 aaKnown RBP10.87□□□□□ -0.67
USP54-201ENST00000339859 SEPT5Q99719 369 aaPredicted RBP10.87□□□□□ -0.67
USP54-201ENST00000339859 ADAM22Q9P0K1 906 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 DPYDQ12882 1025 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 TTC30AQ86WT1 665 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 RHOT2Q8IXI1 618 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 KLHL7Q8IXQ5 586 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 TTC1Q99614 292 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 PAIP2Q9BPZ3 127 aaKnown RBP10.87□□□□□ -0.67
USP54-201ENST00000339859 ANAPC5Q9UJX4 755 aa10.87□□□□□ -0.67
USP54-201ENST00000339859 FARP1Q9Y4F1 1045 aaPredicted RBP10.87□□□□□ -0.67
USP54-201ENST00000339859 ALDH3A1P30838 453 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 LAMTOR4Q0VGL1 99 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 NCOA4Q13772 614 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 CROCCP2Q86T23 111 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 ARHGAP18Q8N392 663 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 DPP3Q9NY33 737 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 TAL1P17542 331 aaPredicted RBP10.86□□□□□ -0.67
USP54-201ENST00000339859 TAP1Q03518 808 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 ELAVL2Q12926 359 aaKnown RBP10.86□□□□□ -0.67
USP54-201ENST00000339859 PKN1Q16512 942 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 BSPRYQ5W0U4 402 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 KIF2CQ99661 725 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 NSRP1Q9H0G5 558 aaKnown RBP10.86□□□□□ -0.67
USP54-201ENST00000339859 PLD1Q13393 1074 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 RPGRIP1Q96KN7 1286 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 SENP7Q9BQF6 1050 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 NHEJ1Q9H9Q4 299 aaPredicted RBP10.86□□□□□ -0.67
USP54-201ENST00000339859 SAMD15Q9P1V8 674 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 SNCAIPQ9Y6H5 919 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 MED24O75448 989 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 EGFRP00533 1210 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 CCNYQ8ND76 341 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 TBKBP1A7MCY6 615 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 KRIT1O00522 736 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 EVCP57679 992 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 EDRF1Q3B7T1 1238 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 WDR72Q3MJ13 1102 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 DEFB118Q96PH6 123 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 RUSC1Q9BVN2 902 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 SEZ6LQ9BYH1 1024 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 PPP2R2CQ9Y2T4 447 aa10.86□□□□□ -0.67
USP54-201ENST00000339859 ZNF189O75820 626 aaPredicted RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 RHOXF2BP0C7M4 288 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 PHBP35232 272 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 CDK17Q00537 523 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 VSTM4Q8IW00 320 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP54-201ENST00000339859 DDX27Q96GQ7 796 aaKnown RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 RHOXF2Q9BQY4 288 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 AGXT2Q9BYV1 514 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 SAR1BQ9Y6B6 198 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 UBA1P22314 1058 aaKnown RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 CDO1Q16878 200 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 MGAT5BQ3V5L5 792 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 EMILIN2Q9BXX0 1053 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 ARFGAP3Q9NP61 516 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 ASTN2O75129 1339 aaPredicted RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 OGTO15294 1046 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 FGRP09769 529 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 MAPTP10636 758 aaKnown RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 GRB10Q13322 594 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 PRAMEF19Q5SWL8 479 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms