RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ZHX1Q9UKY1 873 aaPredicted RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SLC6A14Q9UN76 642 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 USP20Q9Y2K6 914 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 DDX52Q9Y2R4 599 aaKnown RBP eCLIP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF638Q14966 1978 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 GOLGA8IPA6NC78 632 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 GOLGA8SH3BPF8 625 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 GOLGA8MH3BSY2 632 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 GRM8O00222 908 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MAGEB2O15479 319 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SORBS2O94875 1100 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MAP3K6O95382 1288 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MSL3P1P0C860 447 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ITGB6P18564 788 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 CASTP20810 708 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 CYP3A5P20815 502 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MRPS6P82932 125 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ATP8B2P98198 1209 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ADCY1Q08828 1119 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 NR5A1Q13285 461 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 DSG2Q14126 1118 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 WTAPQ15007 396 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 AGERQ15109 404 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PTPRNQ16849 979 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 Q3C1V9 767 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 RTL5Q5HYW3 569 aaPredicted RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 FAM47AQ5JRC9 791 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PRAMEF19Q5SWL8 479 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 CELF3Q5SZQ8 465 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 GPATCH4Q5T3I0 446 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ATF7IP2Q5U623 682 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 C1QL3Q5VWW1 255 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PKN3Q6P5Z2 889 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 STOX1Q6ZVD7 989 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 LIMS2Q7Z4I7 341 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ERICH1Q86X53 443 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 DDX42Q86XP3 938 aaKnown RBP eCLIP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SYT12Q8IV01 421 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 GLIS1Q8NBF1 620 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 USP33Q8TEY7 942 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SH3KBP1Q96B97 665 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PHACTR3Q96KR7 559 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 INPP4AQ96PE3 977 aaPredicted RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 JPH2Q9BR39 696 aaPredicted RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MYL10Q9BUA6 226 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF696Q9H7X3 374 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 UCK1Q9HA47 277 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 LATS2Q9NRM7 1088 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SEMA5BQ9P283 1151 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PCOLCE2Q9UKZ9 415 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 DERAQ9Y315 318 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 LRRK1Q38SD2 2015 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 BDP1A6H8Y1 2624 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MYH10P35580 1976 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 TPP1O14773 563 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 SYN3O14994 580 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 GPR182O15218 404 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 PPP1R37O75864 691 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 LYPLA2O95372 231 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 OLFM2O95897 454 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ARP10275 920 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 IGFBP2P18065 325 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 CCKBRP32239 447 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 P2RY2P41231 377 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 TMPOP42166 694 aaKnown RBP1.85□□□□□ -2.11
LINC00643-201ENST00000334389 VAC14Q08AM6 782 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 PSMD2Q13200 908 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 PTPN14Q15678 1187 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 MAPK6Q16659 721 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 KIAA1614Q5VZ46 1190 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 CAPRIN2Q6IMN6 1127 aaKnown RBP1.85□□□□□ -2.11
LINC00643-201ENST00000334389 IGFL3Q6UXB1 125 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 SLC24A5Q71RS6 500 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ZC3HAV1Q7Z2W4 902 aaKnown RBP1.85□□□□□ -2.11
LINC00643-201ENST00000334389 CYP4X1Q8N118 509 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF248Q8NDW4 579 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 NEDD1Q8NHV4 660 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 C1orf216Q8TAB5 229 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ATRIPQ8WXE1 791 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 CLEC4DQ8WXI8 215 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 FOXJ1Q92949 421 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 DDA1Q9BW61 102 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 OR10A4Q9H209 315 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 FBXO10Q9UK96 956 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 KNSTRNQ9Y448 316 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ALMS1Q8TCU4 4167 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 A0A0B4J269 797 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 NOL4O94818 638 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ZFYP08048 801 aaPredicted RBP1.85□□□□□ -2.11
LINC00643-201ENST00000334389 CYP2C8P10632 490 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 SUOXP51687 545 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 MC1RQ01726 317 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 CCL14Q16627 93 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 TYW1BQ6NUM6 668 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 GADL1Q6ZQY3 521 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF438Q7Z4V0 828 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 BPHLQ86WA6 291 aaPredicted RBP1.85□□□□□ -2.11
LINC00643-201ENST00000334389 LINC01599Q8WXQ3 324 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF558Q96NG5 402 aa1.85□□□□□ -2.11
LINC00643-201ENST00000334389 LRRC3Q9BY71 257 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms