RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SCNN1GP51170 649 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 DNM1Q05193 864 aaKnown RBP17.4■□□□□ 0.38
CLN3-201ENST00000333496 HYAL1Q12794 435 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 COL19A1Q14993 1142 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 TMEM132AQ24JP5 1023 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 ATF7IP2Q5U623 682 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 RRAGBQ5VZM2 374 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 CXCL16Q9H2A7 254 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 PTPRHQ9HD43 1115 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 SNTG2Q9NY99 539 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 KLK14Q9P0G3 267 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 LARSQ9P2J5 1176 aaKnown RBP17.4■□□□□ 0.38
CLN3-201ENST00000333496 COG5Q9UP83 839 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 TNFSF13BQ9Y275 285 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 FSCN2O14926 492 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 MAPTP10636 758 aaKnown RBP17.39■□□□□ 0.38
CLN3-201ENST00000333496 TXLNAP40222 546 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 NCKAP1LP55160 1127 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 AXDND1Q5T1B0 1012 aaPredicted RBP17.39■□□□□ 0.38
CLN3-201ENST00000333496 HACE1Q8IYU2 909 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 BCL7CQ8WUZ0 217 aaPredicted RBP17.39■□□□□ 0.38
CLN3-201ENST00000333496 ASB2Q96Q27 587 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 FIZ1Q96SL8 496 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 ADPGKQ9BRR6 497 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 TARS2Q9BW92 718 aaKnown RBP17.39■□□□□ 0.38
CLN3-201ENST00000333496 UBE2ZQ9H832 354 aaPredicted RBP17.39■□□□□ 0.38
CLN3-201ENST00000333496 PARP2Q9UGN5 583 aa17.39■□□□□ 0.38
CLN3-201ENST00000333496 PDCD11Q14690 1871 aaKnown RBP17.39■□□□□ 0.37
CLN3-201ENST00000333496 ABLIM1O14639 778 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 DEKP35659 375 aaKnown RBP17.39■□□□□ 0.37
CLN3-201ENST00000333496 SMTNP53814 917 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 MRPS5P82675 430 aaKnown RBP17.39■□□□□ 0.37
CLN3-201ENST00000333496 DSC1Q08554 894 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 ATL3Q6DD88 541 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 SHC4Q6S5L8 630 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 COLGALT2Q8IYK4 626 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 IGSF21Q96ID5 467 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 CHAMP1Q96JM3 812 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 MRPL4Q9BYD3 311 aaKnown RBP17.39■□□□□ 0.37
CLN3-201ENST00000333496 KCNG1Q9UIX4 513 aa17.39■□□□□ 0.37
CLN3-201ENST00000333496 ZMYM2Q9UBW7 1377 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 MYMKA6NI61 221 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 CUTAO60888 179 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 PROZP22891 400 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 KCNQ1P51787 676 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 KRT17Q04695 432 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 CTC1Q2NKJ3 1217 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 DCAF4L1Q3SXM0 396 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 CCDC73Q6ZRK6 1079 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 DYMQ7RTS9 669 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 HAUS6Q7Z4H7 955 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 MYCT1Q8N699 235 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 PDILTQ8N807 584 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 KCNN1Q92952 543 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 PABPC5Q96DU9 382 aaKnown RBP17.38■□□□□ 0.37
CLN3-201ENST00000333496 FAM193BQ96PV7 902 aaPredicted RBP17.38■□□□□ 0.37
CLN3-201ENST00000333496 CDT1Q9H211 546 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 PARVGQ9HBI0 331 aa17.38■□□□□ 0.37
CLN3-201ENST00000333496 PUF60Q9UHX1 559 aaKnown RBP17.38■□□□□ 0.37
CLN3-201ENST00000333496 NRP1O14786 923 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 RECQL4O94761 1208 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 FAM13AO94988 1023 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 ALDH2P05091 517 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 KRT18P05783 430 aaKnown RBP17.37■□□□□ 0.37
CLN3-201ENST00000333496 LTBRP36941 435 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 TJAP1Q5JTD0 557 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 SV2BQ7L1I2 683 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 CEP120Q8N960 986 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 KCNG4Q8TDN1 519 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 MICAL1Q8TDZ2 1067 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 DDX12PQ92771 950 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 DNAJC19Q96DA6 116 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 TMEM169Q96HH4 297 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 ZBTB45Q96K62 511 aaPredicted RBP17.37■□□□□ 0.37
CLN3-201ENST00000333496 TMEM175Q9BSA9 504 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 VN1R3Q9BXE9 311 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 RCOR1Q9UKL0 485 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 CFAP45Q9UL16 551 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 PCDHA7Q9UN72 937 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 GDAQ9Y2T3 454 aa17.37■□□□□ 0.37
CLN3-201ENST00000333496 PTGESO14684 152 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 LINC01565O15544 149 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 TRAK2O60296 914 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 STAT6P42226 847 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 E2F4Q16254 413 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 PLPP4Q5VZY2 271 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 PDE12Q6L8Q7 609 aaKnown RBP17.36■□□□□ 0.37
CLN3-201ENST00000333496 RBM23Q86U06 439 aaKnown RBP17.36■□□□□ 0.37
CLN3-201ENST00000333496 TCF25Q9BQ70 676 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 IGFLR1Q9H665 355 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 MARCH5Q9NX47 278 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 CLDND1Q9NY35 253 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 FAN1Q9Y2M0 1017 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 CARNS1A5YM72 827 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 HIDE1A8MVS5 230 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 PER2O15055 1255 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 BMP1P13497 986 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 KCNA5P22460 613 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 NMT1P30419 496 aaKnown RBP17.36■□□□□ 0.37
CLN3-201ENST00000333496 NRIP1P48552 1158 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms