RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TOM1L1O75674 476 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 IQCF3P0C7M6 154 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 HOXC8P31273 242 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 SNRNP35Q16560 246 aaKnown RBP10.92□□□□□ -0.66
HMGB3-201ENST00000325307 MIIPQ5JXC2 388 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 CATSPER4Q7RTX7 472 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 SRGAP1Q7Z6B7 1085 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 CBWD2Q8IUF1 395 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 VSTM4Q8IW00 320 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 GPD1LQ8N335 351 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 NME8Q8N427 588 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 ACO2Q99798 780 aaKnown RBP10.92□□□□□ -0.66
HMGB3-201ENST00000325307 ADAMTS10Q9H324 1103 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 CDHR5Q9HBB8 845 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 TRMT13Q9NUP7 481 aaKnown RBP10.92□□□□□ -0.66
HMGB3-201ENST00000325307 SCN10AQ9Y5Y9 1956 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 GPR32O75388 356 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 PIGRP01833 764 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 TFRCP02786 760 aaKnown RBP10.92□□□□□ -0.66
HMGB3-201ENST00000325307 NCBP1Q09161 790 aaKnown RBP10.92□□□□□ -0.66
HMGB3-201ENST00000325307 ZNF568Q3ZCX4 644 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 TAF3Q5VWG9 929 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 SPECC1LQ69YQ0 1117 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 CCDC127Q96BQ5 260 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 CPB2Q96IY4 423 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 TRIP12Q14669 1992 aaPredicted RBP10.92□□□□□ -0.66
HMGB3-201ENST00000325307 TRIM49P0CI25 452 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 TRIM49CP0CI26 452 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 THPOP40225 353 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 ACOT2P49753 483 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 MARSP56192 900 aaKnown RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 KCNH2Q12809 1159 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 INTS8Q75QN2 995 aaKnown RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 DNM1LO00429 736 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 AFPP02771 609 aaKnown RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 SEZ6Q53EL9 994 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 SERINC5Q86VE9 423 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 SESTD1Q86VW0 696 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 IFNLR1Q8IU57 520 aaPredicted RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 KCNN1Q92952 543 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 DNAH12Q6ZR08 3092 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 ZNF233A6NK53 670 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 EXTL3O43909 919 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 DARSP14868 501 aaKnown RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 EIF4BP23588 611 aaKnown RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 MRPS6P82932 125 aaKnown RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 PPP2R3AQ06190 1150 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 BFSP1Q12934 665 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 SYCP1Q15431 976 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 PKN2Q16513 984 aaKnown RBP10.91□□□□□ -0.66
HMGB3-201ENST00000325307 PPFIBP1Q86W92 1011 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 CPLX3Q8WVH0 158 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 PHF24Q9UPV7 400 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 CDY2AQ9Y6F7 541 aa10.91□□□□□ -0.66
HMGB3-201ENST00000325307 A0A0B4J269 797 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 ADRB2P07550 413 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 DLATP10515 647 aaKnown RBP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 SFPQP23246 707 aaKnown RBP eCLIP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 VAMP7P51809 220 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 OSTNP61366 133 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 SNX17Q15036 470 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 EEF1DP3Q658K8 133 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 MPZL3Q6UWV2 235 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 TSHZ1Q6ZSZ6 1077 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 THNSL1Q8IYQ7 743 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 CCDC155Q8N6L0 562 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 FAM212AQ96EL1 285 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 CRACR2AQ9BSW2 395 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 CELF4Q9BZC1 486 aaKnown RBP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 TRPV6Q9H1D0 765 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 KIAA1586Q9HCI6 787 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 IMPACTQ9P2X3 320 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 CNTNAP2Q9UHC6 1331 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 KIAA0391O15091 583 aaKnown RBP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 LDHAP00338 332 aaKnown RBP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 TPM1P09493 284 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 ARF4P18085 180 aaPredicted RBP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 CRYBB1P53674 252 aaPredicted RBP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 FAM187BQ17R55 369 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 USP37Q86T82 979 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 WNT8BQ93098 351 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 SLC35C1Q96A29 364 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 ADPGKQ9BRR6 497 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 SENP6Q9GZR1 1112 aaPredicted RBP10.9□□□□□ -0.66
HMGB3-201ENST00000325307 HAPLN2Q9GZV7 340 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 STYXL1Q9Y6J8 313 aa10.9□□□□□ -0.66
HMGB3-201ENST00000325307 BRCA2P51587 3418 aa10.9□□□□□ -0.67
HMGB3-201ENST00000325307 TSPAN1O60635 241 aa10.9□□□□□ -0.67
HMGB3-201ENST00000325307 PTPN11Q06124 597 aaPredicted RBP10.9□□□□□ -0.67
HMGB3-201ENST00000325307 U2AF1L4Q8WU68 220 aaKnown RBP10.9□□□□□ -0.67
HMGB3-201ENST00000325307 ZNF333Q96JL9 665 aa10.9□□□□□ -0.67
HMGB3-201ENST00000325307 FNBP1Q96RU3 617 aa10.9□□□□□ -0.67
HMGB3-201ENST00000325307 OGDHLQ9ULD0 1010 aa10.9□□□□□ -0.67
HMGB3-201ENST00000325307 TNFSF13BQ9Y275 285 aa10.9□□□□□ -0.67
HMGB3-201ENST00000325307 TRPV2Q9Y5S1 764 aa10.9□□□□□ -0.67
HMGB3-201ENST00000325307 TRIM21P19474 475 aaKnown RBP10.89□□□□□ -0.67
HMGB3-201ENST00000325307 ATN1P54259 1190 aaPredicted RBP10.89□□□□□ -0.67
HMGB3-201ENST00000325307 AMHR2Q16671 573 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 ZBTB41Q5SVQ8 909 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM40Q8WWA1 233 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms