RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 XXYLT1Q8NBI6 393 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 KIFAP3Q92845 792 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 KLHL29Q96CT2 875 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 SAAL1Q96ER3 474 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 TUFT1Q9NNX1 390 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 CCDC88AQ3V6T2 1871 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 SLC16A4O15374 487 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 NEFHP12036 1026 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 MAPK4P31152 587 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 GBP1P32455 592 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 GMPSP49915 693 aaPredicted RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 PLCB3Q01970 1234 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 SEPT7Q16181 437 aaKnown RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 RNF207Q6ZRF8 634 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 OTOP1Q7RTM1 612 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 C1orf131Q8NDD1 294 aaKnown RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 ZKSCAN4Q969J2 545 aaPredicted RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 FAM118BQ9BPY3 351 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 ZSWIM1Q9BR11 485 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 ANAPC7Q9UJX3 599 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 COG5Q9UP83 839 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 TRPC6Q9Y210 931 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 TCP11X1B4DZS4 312 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 PPFIA2O75334 1257 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 SUN1O94901 812 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 SGPL1O95470 568 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 ARP10275 920 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 PYGMP11217 842 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 ATP5DP30049 168 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 EPC2Q52LR7 807 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 XKR9Q5GH70 373 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 ARHGEF16Q5VV41 709 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 DUPD1Q68J44 220 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 AGBL1Q96MI9 1066 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 ACCSQ96QU6 501 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 GLIS2Q9BZE0 524 aaPredicted RBP11.27□□□□□ -0.6
COL3A1-202ENST00000317840 FGFR1OP2Q9NVK5 253 aa11.27□□□□□ -0.6
COL3A1-202ENST00000317840 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.27□□□□□ -0.6
COL3A1-202ENST00000317840 SPDYE2BA6NHP3 402 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 KIAA0391O15091 583 aaKnown RBP11.27□□□□□ -0.61
COL3A1-202ENST00000317840 SLC26A4O43511 780 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 AGTP01019 485 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 SPDYE6P0CI01 402 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 CETN2P41208 172 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 MFAP3P55082 362 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 PLCB4Q15147 1175 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 ERMARDQ5T6L9 678 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 DCAF12L1Q5VU92 463 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 GADL1Q6ZQY3 521 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 C1orf186Q6ZWK4 172 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 PRELID2Q8N945 189 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 RNF25Q96BH1 459 aaPredicted RBP11.27□□□□□ -0.61
COL3A1-202ENST00000317840 RSRC1Q96IZ7 334 aaKnown RBP11.27□□□□□ -0.61
COL3A1-202ENST00000317840 TMEM206Q9H813 350 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 DNAJC18Q9H819 358 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 LRRC4CQ9HCJ2 640 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 YDJCA8MPS7 323 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 DDX3YO15523 660 aaKnown RBP11.27□□□□□ -0.61
COL3A1-202ENST00000317840 ATF2P15336 505 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 C2CD6Q53TS8 623 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 TRPM8Q7Z2W7 1104 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 ARHGEF19Q8IW93 802 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 C3orf20Q8ND61 904 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 ATG4AQ8WYN0 398 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 LENG9Q96B70 501 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 VAV3Q9UKW4 847 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 TPX2Q9ULW0 747 aaKnown RBP11.27□□□□□ -0.61
COL3A1-202ENST00000317840 STXBP5LQ9Y2K9 1186 aa11.27□□□□□ -0.61
COL3A1-202ENST00000317840 LTBP4Q8N2S1 1624 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 RTN2O75298 545 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 DRD4P21917 467 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 KRT17Q04695 432 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 BMT2Q1RMZ1 405 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 SPRED3Q2MJR0 410 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 FAM47EQ6ZV65 393 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 SRRM1Q8IYB3 904 aaKnown RBP11.26□□□□□ -0.61
COL3A1-202ENST00000317840 NT5C1BQ96P26 610 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 POP1Q99575 1024 aaKnown RBP11.26□□□□□ -0.61
COL3A1-202ENST00000317840 HSD17B14Q9BPX1 270 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 YY1AP1Q9H869 796 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 MYOZ2Q9NPC6 264 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.26□□□□□ -0.61
COL3A1-202ENST00000317840 A0A1B0GUA9 196 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 TMEM120BA0PK00 339 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 BRAFP15056 766 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 MYO1EQ12965 1108 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 MTMR2Q13614 643 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 KYNUQ16719 465 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 ANGEL2Q5VTE6 544 aaKnown RBP11.26□□□□□ -0.61
COL3A1-202ENST00000317840 HAUS6Q7Z4H7 955 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 LDHDQ86WU2 507 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 SLC13A5Q86YT5 568 aaPredicted RBP11.26□□□□□ -0.61
COL3A1-202ENST00000317840 KIF2BQ8N4N8 673 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 FAM212AQ96EL1 285 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 WDR18Q9BV38 432 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 WNT8AQ9H1J5 351 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 UNC45AQ9H3U1 944 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 HSPBP1Q9NZL4 362 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 KLHL14Q9P2G3 628 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 PFASO15067 1338 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms