RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PNMA2Q9UL42 364 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 PPP1R37O75864 691 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 HSD17B4P51659 736 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 JAMLQ86YT9 394 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 ZNF564Q8TBZ8 553 aaPredicted RBP17.89■□□□□ 0.45
VPS54-201ENST00000272322 SEMA4AQ9H3S1 761 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 LTBP1Q14766 1721 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 PHF20L1A8MW92 1017 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 CAND2O75155 1236 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 CHRNB2P17787 502 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 WNT7BP56706 349 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 PSMC5P62195 406 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 PPATQ06203 517 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 ZBTB41Q5SVQ8 909 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 TTC27Q6P3X3 843 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 SLFN11Q7Z7L1 901 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 MCF2L2Q86YR7 1114 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 ZNF526Q8TF50 670 aaPredicted RBP17.88■□□□□ 0.45
VPS54-201ENST00000272322 LRRC45Q96CN5 670 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 SLC38A10Q9HBR0 1119 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 PXMP2Q9NR77 195 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 WDR64B1ANS9 1081 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 MARK3P27448 753 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 CCDC137Q6PK04 289 aaKnown RBP17.88■□□□□ 0.45
VPS54-201ENST00000272322 CEP89Q96ST8 783 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 PPP1R16BQ96T49 567 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 ANAPC7Q9UJX3 599 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 BRWD3Q6RI45 1802 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 ACSL3O95573 720 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 KCNA3P22001 575 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 CDR1P51861 262 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 OSTNP61366 133 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 SLC29A2Q14542 456 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 PPP1R7Q15435 360 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 CAPN12Q6ZSI9 719 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 TMC3Q7Z5M5 1100 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 PACS2Q86VP3 889 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 CCDC60Q8IWA6 550 aaPredicted RBP17.88■□□□□ 0.45
VPS54-201ENST00000272322 TMEM130Q8N3G9 435 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 ACSF2Q96CM8 615 aaPredicted RBP17.88■□□□□ 0.45
VPS54-201ENST00000272322 ZBTB10Q96DT7 871 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 TCHPQ9BT92 498 aa17.88■□□□□ 0.45
VPS54-201ENST00000272322 CYP11B1P15538 503 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 B3GNT9Q6UX72 402 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 TMEM161BQ8NDZ6 487 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 DBR1Q9UK59 544 aaKnown RBP17.87■□□□□ 0.45
VPS54-201ENST00000272322 UBIAD1Q9Y5Z9 338 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 HSPA9P38646 679 aaKnown RBP17.87■□□□□ 0.45
VPS54-201ENST00000272322 GMPSP49915 693 aaPredicted RBP17.87■□□□□ 0.45
VPS54-201ENST00000272322 CNTN2Q02246 1040 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 WDR78Q5VTH9 848 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 PRELID2Q8N945 189 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 PARD3BQ8TEW8 1205 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 CCDC114Q96M63 670 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 CCT8L2Q96SF2 557 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 GGT7Q9UJ14 662 aa17.87■□□□□ 0.45
VPS54-201ENST00000272322 PDE6CP51160 858 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 KRT39Q6A163 491 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 UBL4BQ8N7F7 174 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 NRXN2Q9P2S2 1712 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 FOCADQ5VW36 1801 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 CCDC188H7C350 402 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 VWA5AO00534 786 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 MDH1P40925 334 aaKnown RBP17.86■□□□□ 0.45
VPS54-201ENST00000272322 IFI35P80217 286 aaPredicted RBP17.86■□□□□ 0.45
VPS54-201ENST00000272322 FMO1Q01740 532 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 CUL1Q13616 776 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 SEL1L2Q5TEA6 688 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 PCNX4Q63HM2 1172 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 KAZNQ674X7 775 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 SLC39A4Q6P5W5 647 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 AEBP2Q6ZN18 517 aaPredicted RBP17.86■□□□□ 0.45
VPS54-201ENST00000272322 ZBTB33Q86T24 672 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 NT5C1BQ96P26 610 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 FNBP1Q96RU3 617 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 C11orf70Q9BRQ4 267 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 TMBIM4Q9HC24 238 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 RAB20Q9NX57 234 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 CNOT7Q9UIV1 285 aaKnown RBP17.86■□□□□ 0.45
VPS54-201ENST00000272322 PCDHA10Q9Y5I2 948 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 COL4A5P29400 1685 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 ZBTB48P10074 688 aaPredicted RBP17.86■□□□□ 0.45
VPS54-201ENST00000272322 RPL21P46778 160 aaKnown RBP17.86■□□□□ 0.45
VPS54-201ENST00000272322 ERP44Q9BS26 406 aa17.86■□□□□ 0.45
VPS54-201ENST00000272322 WDR46O15213 610 aaKnown RBP17.85■□□□□ 0.45
VPS54-201ENST00000272322 CD58P19256 250 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 PSMC4P43686 418 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 LRRC14Q15048 493 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 TBC1D22BQ9NU19 505 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 ASIC3Q9UHC3 531 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 TBK1Q9UHD2 729 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 CAPN7Q9Y6W3 813 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 PI4K2BG5E9Z4 385 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 RRM1P23921 792 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 HOXA7P31268 230 aaPredicted RBP17.85■□□□□ 0.45
VPS54-201ENST00000272322 LIG4P49917 911 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 MFAP3P55082 362 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 OTUD6BQ8N6M0 293 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 FBXL13Q8NEE6 735 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 SPIRE2Q8WWL2 714 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms