RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 LXNQ9BS40 222 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 MCM8Q9UJA3 840 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 THSD7AQ9UPZ6 1657 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 RASA4BC9J798 803 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 RASA4O43374 803 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ONECUT3O60422 494 aaPredicted RBP12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ARP10275 920 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ATF2P15336 505 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 DYNLT1P63172 113 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 BFSP1Q12934 665 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ZDHHC24Q6UX98 284 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ZDHHC14Q8IZN3 488 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 SLC5A5Q92911 643 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 TRIM6Q9C030 488 aaPredicted RBP12.82□□□□□ -0.36
USHBP1-201ENST00000252597 STMN4Q9H169 189 aaPredicted RBP12.82□□□□□ -0.36
USHBP1-201ENST00000252597 KCNMB3Q9NPA1 279 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 FBXO28Q9NVF7 368 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 USP15Q9Y4E8 981 aaPredicted RBP12.82□□□□□ -0.36
USHBP1-201ENST00000252597 RPTORQ8N122 1335 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 hCG_1984214I3L0E3 225 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 PPFIA2O75334 1257 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 EYA4O95677 639 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 BMP3P12645 472 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 COILP38432 576 aaPredicted RBP12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ITGA8P53708 1063 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ZNF713Q8N859 430 aaPredicted RBP12.82□□□□□ -0.36
USHBP1-201ENST00000252597 ZSWIM1Q9BR11 485 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 KIF9Q9HAQ2 790 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 PFASO15067 1338 aa12.82□□□□□ -0.36
USHBP1-201ENST00000252597 CHRNA3P32297 505 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 PSMC4P43686 418 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 VAMP7P51809 220 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 GSCP56915 257 aaPredicted RBP12.81□□□□□ -0.36
USHBP1-201ENST00000252597 DRP2Q13474 957 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 TAF11Q15544 211 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 SPATA21Q7Z572 469 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 MIEF2Q96C03 454 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 SYNGAP1Q96PV0 1343 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 SLITRK3O94933 977 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 GYS1P13807 737 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 PRKCIP41743 596 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 NPEPPSP55786 919 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 RWDD2BP57060 319 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 DDR1Q08345 913 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 ZNF394Q53GI3 561 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 PADI6Q6TGC4 694 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 ARMC9Q7Z3E5 817 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 ERP27Q96DN0 273 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 PCDHB18PQ96TA0 734 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 SLCO1B3Q9NPD5 702 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 HAO1Q9UJM8 370 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 NHSQ6T4R5 1651 aa12.81□□□□□ -0.36
USHBP1-201ENST00000252597 PITPNM2Q9BZ72 1349 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 SMAD1Q15797 465 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 CCDC6Q16204 474 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 CNGA2Q16280 664 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 MIER3Q7Z3K6 550 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 SLC13A5Q86YT5 568 aaPredicted RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 CBWD2Q8IUF1 395 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ETNPPLQ8TBG4 499 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 RMDN2Q96LZ7 410 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 C10orf88Q9H8K7 445 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ZDHHC18Q9NUE0 388 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ZNF148Q9UQR1 794 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 NQO1P15559 274 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 CTNNA2P26232 953 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 CRKP46108 304 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 OVGP1Q12889 678 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ORC2Q13416 577 aaPredicted RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 DHX34Q14147 1143 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 SETDB1Q15047 1291 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 PLA2G4FQ68DD2 849 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 DPH6Q7L8W6 267 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 NOP9Q86U38 636 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ACER1Q8TDN7 264 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 C12orf65Q9H3J6 166 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 DNAJC18Q9H819 358 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 WRAP73Q9P2S5 460 aaPredicted RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 STXBP5LQ9Y2K9 1186 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 FAM187AA6NFU0 413 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 AGTP01019 485 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ZBTB16Q05516 673 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 PPATQ06203 517 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ANKMY2Q8IV38 441 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 RHOT2Q8IXI1 618 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 CYP4X1Q8N118 509 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 ATXN2LQ8WWM7 1075 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 CSRNP1Q96S65 589 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 NAP1L4Q99733 375 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 C11orf70Q9BRQ4 267 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 TMEM117Q9H0C3 514 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 KDM4CQ9H3R0 1056 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 SAYSD1Q9NPB0 183 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 GRHL1Q9NZI5 618 aa12.8□□□□□ -0.36
USHBP1-201ENST00000252597 NOP53Q9NZM5 478 aaKnown RBP12.8□□□□□ -0.36
USHBP1-201ENST00000252597 O00370 1275 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 PODXLO00592 558 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 SNX3O60493 162 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 GAS8O95995 478 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 ZSCAN5DPP0CG00 497 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms