RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 FBXL18Q96ME1 805 aa24.49■■□□□ 1.51
VTI1B-201ENST00000216456 HERC2P3Q9BVR0 1158 aa24.49■■□□□ 1.51
VTI1B-201ENST00000216456 BHMT2Q9H2M3 363 aa24.49■■□□□ 1.51
VTI1B-201ENST00000216456 KIAA1024Q9UPX6 916 aa24.49■■□□□ 1.51
VTI1B-201ENST00000216456 GIT1Q9Y2X7 761 aa24.49■■□□□ 1.51
VTI1B-201ENST00000216456 ASGR2P07307 311 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 FXR2P51116 673 aaKnown RBP eCLIP24.48■■□□□ 1.51
VTI1B-201ENST00000216456 PTPN21Q16825 1174 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 PPP4R3CPQ6ZMV5 832 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 CABP7Q86V35 215 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 RNF168Q8IYW5 571 aaPredicted RBP24.48■■□□□ 1.51
VTI1B-201ENST00000216456 PBXIP1Q96AQ6 731 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 GPR62Q9BZJ7 368 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 CCDC113Q9H0I3 377 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 MRPL17Q9NRX2 175 aaKnown RBP24.48■■□□□ 1.51
VTI1B-201ENST00000216456 PRMT7Q9NVM4 692 aaPredicted RBP24.48■■□□□ 1.51
VTI1B-201ENST00000216456 SNTG2Q9NY99 539 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 LRWD1Q9UFC0 647 aa24.48■■□□□ 1.51
VTI1B-201ENST00000216456 TEX28O15482 410 aa24.47■■□□□ 1.51
VTI1B-201ENST00000216456 PDGFBP01127 241 aaPredicted RBP24.47■■□□□ 1.51
VTI1B-201ENST00000216456 ORC2Q13416 577 aaPredicted RBP24.47■■□□□ 1.51
VTI1B-201ENST00000216456 GIT2Q14161 759 aa24.47■■□□□ 1.51
VTI1B-201ENST00000216456 IER5LQ5T953 404 aa24.47■■□□□ 1.51
VTI1B-201ENST00000216456 ZBTB8OSQ8IWT0 167 aa24.47■■□□□ 1.51
VTI1B-201ENST00000216456 ASIC4Q96FT7 647 aa24.47■■□□□ 1.51
VTI1B-201ENST00000216456 RPS6KC1Q96S38 1066 aa24.47■■□□□ 1.51
VTI1B-201ENST00000216456 DDX19AQ9NUU7 478 aaKnown RBP24.47■■□□□ 1.51
VTI1B-201ENST00000216456 DZANK1Q9NVP4 752 aa24.47■■□□□ 1.51
VTI1B-201ENST00000216456 NOL7Q9UMY1 257 aaKnown RBP24.47■■□□□ 1.51
VTI1B-201ENST00000216456 ARIH1Q9Y4X5 557 aaPredicted RBP24.47■■□□□ 1.51
VTI1B-201ENST00000216456 ZNF318Q5VUA4 2279 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 E9PMD0 336 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 PRKCBP05771 671 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 URODP06132 367 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 SPATA31D3P0C874 917 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 IGFBP6P24592 240 aaPredicted RBP24.46■■□□□ 1.51
VTI1B-201ENST00000216456 TRAPPC10P48553 1259 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 KIAA0319Q5VV43 1072 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 KIAA1841Q6NSI8 718 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 SPATA31D4Q6ZUB0 917 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 ZBTB33Q86T24 672 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 GLYCTKQ8IVS8 523 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 SNX29Q8TEQ0 813 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 HASPINQ8TF76 798 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 EMILIN2Q9BXX0 1053 aa24.46■■□□□ 1.51
VTI1B-201ENST00000216456 TDRD15B5MCY1 1934 aaKnown RBP24.45■■□□□ 1.51
VTI1B-201ENST00000216456 CARNS1A5YM72 827 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 PTGESO14684 152 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 RPL17P18621 184 aaKnown RBP24.45■■□□□ 1.5
VTI1B-201ENST00000216456 MTHFRP42898 656 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 PRPF4BQ13523 1007 aaKnown RBP24.45■■□□□ 1.5
VTI1B-201ENST00000216456 FAM187BQ17R55 369 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 TMEM132AQ24JP5 1023 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 ATAT1Q5SQI0 421 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 KCNK18Q7Z418 384 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 KREMEN2Q8NCW0 462 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 DEPTORQ8TB45 409 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 RIPOR3Q96MK2 946 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 NECTIN4Q96NY8 510 aa24.45■■□□□ 1.5
VTI1B-201ENST00000216456 CASTOR2A6NHX0 329 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 SPDYE4A6NLX3 237 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 RECQL4O94761 1208 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 BRD1O95696 1058 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 NAMPTP43490 491 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 GLUD2P49448 558 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 SIGLEC14Q08ET2 396 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 RABEP1Q15276 862 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 NT5DC1Q5TFE4 455 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 HAUS3Q68CZ6 603 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 MCTP1Q6DN14 999 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 FUT10Q6P4F1 479 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 IGSF22Q8N9C0 903 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 TMX3Q96JJ7 454 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 PRIMPOLQ96LW4 560 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 MFSD14AQ96MC6 490 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 MMTAG2Q9BU76 263 aaKnown RBP24.44■■□□□ 1.5
VTI1B-201ENST00000216456 MAN1C1Q9NR34 630 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 LIMD1Q9UGP4 676 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 NR2E1Q9Y466 385 aa24.44■■□□□ 1.5
VTI1B-201ENST00000216456 PLXNA3P51805 1871 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 RFPL2O75678 378 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 HOXD11P31277 338 aaPredicted RBP24.43■■□□□ 1.5
VTI1B-201ENST00000216456 VCPP55072 806 aaKnown RBP24.43■■□□□ 1.5
VTI1B-201ENST00000216456 DSG1Q02413 1049 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 GRIK3Q13003 919 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 MAPK6Q16659 721 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 GPR149Q86SP6 731 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 PPFIBP1Q86W92 1011 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 PALB2Q86YC2 1186 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 HACE1Q8IYU2 909 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 RUSC1Q9BVN2 902 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 COLEC11Q9BWP8 271 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 SFXN1Q9H9B4 322 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.43■■□□□ 1.5
VTI1B-201ENST00000216456 CHST7Q9NS84 486 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 GDAQ9Y2T3 454 aa24.43■■□□□ 1.5
VTI1B-201ENST00000216456 ACKR2O00590 384 aa24.42■■□□□ 1.5
VTI1B-201ENST00000216456 N4BP3O15049 544 aa24.42■■□□□ 1.5
VTI1B-201ENST00000216456 PRSS55Q6UWB4 352 aaPredicted RBP24.42■■□□□ 1.5
VTI1B-201ENST00000216456 BMP8AQ7Z5Y6 402 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms