RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	UPS2	P35200	230 aa		0.8	□□□□□ -2.28
UBP3	YER151C	VPS24	P36095	224 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	MTC4	P38335	694 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	LRP1	P38801	184 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	MDM31	P38880	579 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YHR210C	P38893	341 aa		0.8	□□□□□ -2.28
UBP3	YER151C	IPT1	P38954	527 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YNL200C	P40165	246 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	RIC1	P40395	1056 aa		0.8	□□□□□ -2.28
UBP3	YER151C	ARF3	P40994	183 aa	RIP-Chip data	0.8	□□□□□ -2.28	not detected
UBP3	YER151C	ECO1	P43605	281 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YDL186W	P48568	277 aa		0.8	□□□□□ -2.28
UBP3	YER151C	HSH155	P49955	971 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	BOL2	P53082	120 aa		0.8	□□□□□ -2.28
UBP3	YER151C	LSG1	P53145	640 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	YGL039W	P53183	348 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	RCF1	Q03713	159 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YLR177W	Q06251	628 aa		0.8	□□□□□ -2.28
UBP3	YER151C	RDS3	Q06835	107 aa	Predicted RBP	0.8	□□□□□ -2.28
UBP3	YER151C	YOR376W	Q08900	122 aa		0.8	□□□□□ -2.28
UBP3	YER151C	BBP1	Q12365	385 aa		0.8	□□□□□ -2.28
UBP3	YER151C	Q0144	Q9ZZW2	109 aa		0.8	□□□□□ -2.28
UBP3	YER151C	BRR2	P32639	2163 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	HIS1	P00498	297 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	MES1	P00958	751 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	RAD10	P06838	210 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YOL162W	P0CF19	215 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YAR066W	P0CX18	203 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YHR214W	P0CX19	203 aa		0.8	□□□□□ -2.28
UBP3	YER151C	DPM1	P14020	267 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	RPL30	P14120	105 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	CHA1	P25379	360 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	MCM10	P32354	571 aa		0.8	□□□□□ -2.28
UBP3	YER151C	TFC1	P32367	649 aa		0.8	□□□□□ -2.28
UBP3	YER151C	PDB1	P32473	366 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	YCR087C-A	P37263	153 aa		0.8	□□□□□ -2.28
UBP3	YER151C	PRS4	P38063	326 aa	Predicted RBP	0.8	□□□□□ -2.28
UBP3	YER151C	KTR3	P38130	404 aa	Predicted RBP	0.8	□□□□□ -2.28
UBP3	YER151C	CHL4	P38907	458 aa		0.8	□□□□□ -2.28
UBP3	YER151C	KRE29	P40026	464 aa		0.8	□□□□□ -2.28
UBP3	YER151C	RGI2	P40188	164 aa		0.8	□□□□□ -2.28
UBP3	YER151C	ALG8	P40351	577 aa		0.8	□□□□□ -2.28
UBP3	YER151C	AXL1	P40851	1208 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YPI1	P43587	155 aa		0.8	□□□□□ -2.28
UBP3	YER151C	ARP3	P47117	449 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	APT1	P49435	187 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	DIE2	P50076	525 aa		0.8	□□□□□ -2.28
UBP3	YER151C	TPN1	P53099	579 aa		0.8	□□□□□ -2.28
UBP3	YER151C	OGG1	P53397	376 aa	Predicted RBP	0.8	□□□□□ -2.28
UBP3	YER151C	RHO4	Q00246	291 aa		0.8	□□□□□ -2.28
UBP3	YER151C	MSS11	Q03825	758 aa		0.8	□□□□□ -2.28
UBP3	YER151C	ARV1	Q06541	321 aa		0.8	□□□□□ -2.28
UBP3	YER151C	RDL2	Q08742	149 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	RRP36	Q12481	300 aa	Predicted RBP	0.8	□□□□□ -2.28
UBP3	YER151C	DFM1	Q12743	341 aa	Known RBP	0.8	□□□□□ -2.28
UBP3	YER151C	YGR240C-A	Q3E786	66 aa		0.8	□□□□□ -2.28
UBP3	YER151C	YER078W-A	Q3E7A2	54 aa		0.8	□□□□□ -2.28
UBP3	YER151C	MHF2	Q3E829	80 aa		0.8	□□□□□ -2.28
UBP3	YER151C	CBP2	P03874	630 aa	Predicted RBP	0.79	□□□□□ -2.28
UBP3	YER151C	URA6	P15700	204 aa		0.79	□□□□□ -2.28
UBP3	YER151C	FUS3	P16892	353 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	PTR2	P32901	601 aa		0.79	□□□□□ -2.28
UBP3	YER151C	NIP100	P33420	868 aa		0.79	□□□□□ -2.28
UBP3	YER151C	MSN2	P33748	704 aa		0.79	□□□□□ -2.28
UBP3	YER151C	AUR1	P36107	401 aa	Predicted RBP	0.79	□□□□□ -2.28
UBP3	YER151C	DIA4	P38705	446 aa	Predicted RBP	0.79	□□□□□ -2.28
UBP3	YER151C	UIP3	P39547	235 aa		0.79	□□□□□ -2.28
UBP3	YER151C	SIM1	P40472	476 aa		0.79	□□□□□ -2.28
UBP3	YER151C	GCD10	P41814	478 aa		0.79	□□□□□ -2.28
UBP3	YER151C	GWT1	P47026	490 aa		0.79	□□□□□ -2.28
UBP3	YER151C	TIM21	P53220	239 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YNL040W	P53960	456 aa	Predicted RBP	0.79	□□□□□ -2.28
UBP3	YER151C	YNL010W	P53981	241 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	YDR415C	Q04033	374 aa	Predicted RBP	0.79	□□□□□ -2.28
UBP3	YER151C	SPC2	Q04969	178 aa		0.79	□□□□□ -2.28
UBP3	YER151C	SYO1	Q07395	620 aa		0.79	□□□□□ -2.28
UBP3	YER151C	REX4	Q08237	289 aa		0.79	□□□□□ -2.28
UBP3	YER151C	ORT1	Q12375	292 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YMR105W-A	Q8TGS8	64 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YIH1	P25637	258 aa		0.79	□□□□□ -2.28
UBP3	YER151C	ECM25	P32525	599 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YEL043W	P32618	956 aa		0.79	□□□□□ -2.28
UBP3	YER151C	GYP6	P32806	458 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YBL055C	P34220	418 aa	Predicted RBP	0.79	□□□□□ -2.28
UBP3	YER151C	TUL1	P36096	758 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YHR127W	P38833	243 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	YJL118W	P47022	219 aa		0.79	□□□□□ -2.28
UBP3	YER151C	PHB2	P50085	310 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YGR066C	P53242	292 aa		0.79	□□□□□ -2.28
UBP3	YER151C	ARE2	P53629	642 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	MPP6	P53725	186 aa	Predicted RBP	0.79	□□□□□ -2.28
UBP3	YER151C	YDR274C	P87283	123 aa		0.79	□□□□□ -2.28
UBP3	YER151C	UTP6	Q02354	440 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	YDR476C	Q03362	224 aa		0.79	□□□□□ -2.28
UBP3	YER151C	CWC21	Q03375	135 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	DPB4	Q04603	196 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	UPS1	Q05776	175 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YLR345W	Q06137	509 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YPR078C	Q06813	372 aa		0.79	□□□□□ -2.28
UBP3	YER151C	VAM10	Q08474	114 aa		0.79	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms