RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 PGBD4Q96DM1 585 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 ZNF577Q9BSK1 485 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 NRBP2Q9NSY0 501 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 KANSL3Q9P2N6 904 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 ANGPTL2Q9UKU9 493 aa18.37■□□□□ 0.53
CLN3-264ENST00000637985 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.36■□□□□ 0.53
CLN3-264ENST00000637985 TGM5O43548 720 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 GAS2O43903 313 aaKnown RBP18.36■□□□□ 0.53
CLN3-264ENST00000637985 LRP3O75074 770 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 OATP04181 439 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 CD72P21854 359 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 FSHRP23945 695 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 RPS9P46781 194 aaKnown RBP18.36■□□□□ 0.53
CLN3-264ENST00000637985 CLK2P49760 499 aaKnown RBP18.36■□□□□ 0.53
CLN3-264ENST00000637985 AP3B2Q13367 1082 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 ADCK5Q3MIX3 580 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 PALB2Q86YC2 1186 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 RAB11FIP4Q86YS3 637 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 CRYGNQ8WXF5 182 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 KCNB2Q92953 911 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 FAM193BQ96PV7 902 aaPredicted RBP18.36■□□□□ 0.53
CLN3-264ENST00000637985 NELL2Q99435 816 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 CDH7Q9ULB5 785 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 PCDHB2Q9Y5E7 798 aa18.36■□□□□ 0.53
CLN3-264ENST00000637985 PKD1L2Q7Z442 2459 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 ANKRD11Q6UB99 2663 aaPredicted RBP18.35■□□□□ 0.53
CLN3-264ENST00000637985 A0A087WZ62 844 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 ZBTB43O43298 467 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 CYP3A4P08684 503 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 PMLP29590 882 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 ADCY7P51828 1080 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 NAPAP54920 295 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 PFKPQ01813 784 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 DSG1Q02413 1049 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 FZD5Q13467 585 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 LAIR1Q6GTX8 287 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 LILRA6Q6PI73 481 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 MRPL10Q7Z7H8 261 aaKnown RBP18.35■□□□□ 0.53
CLN3-264ENST00000637985 FDXACB1Q9BRP7 624 aaPredicted RBP18.35■□□□□ 0.53
CLN3-264ENST00000637985 SH2B1Q9NRF2 756 aaPredicted RBP18.35■□□□□ 0.53
CLN3-264ENST00000637985 CEP295Q9C0D2 2601 aa18.35■□□□□ 0.53
CLN3-264ENST00000637985 TDGF1P13385 188 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 TARSP26639 723 aaKnown RBP18.34■□□□□ 0.53
CLN3-264ENST00000637985 RCAN1P53805 252 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 SHC2P98077 582 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 PRKCEQ02156 737 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 TARBP2Q15633 366 aaKnown RBP18.34■□□□□ 0.53
CLN3-264ENST00000637985 RTN1Q16799 776 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 PPP1R18Q6NYC8 613 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 MTSS1LQ765P7 747 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 CELF5Q8N6W0 485 aaKnown RBP18.34■□□□□ 0.53
CLN3-264ENST00000637985 TCEANC2Q96MN5 208 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 INO80BQ9C086 356 aaPredicted RBP18.34■□□□□ 0.53
CLN3-264ENST00000637985 RSAD1Q9HA92 442 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 CHST7Q9NS84 486 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 RAB23Q9ULC3 237 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 BRPF3Q9ULD4 1205 aa18.34■□□□□ 0.53
CLN3-264ENST00000637985 ZZEF1O43149 2961 aa18.33■□□□□ 0.53
CLN3-264ENST00000637985 CNTNAP2Q9UHC6 1331 aa18.33■□□□□ 0.53
CLN3-264ENST00000637985 NCAM2O15394 837 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 ZMYND10O75800 440 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 POMCP01189 267 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 RETP07949 1114 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 HOXB3P14651 431 aaPredicted RBP18.33■□□□□ 0.52
CLN3-264ENST00000637985 MTAPQ13126 283 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 ACAP1Q15027 740 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 LPAL2Q16609 132 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 COLGALT2Q8IYK4 626 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 DDX1Q92499 740 aaKnown RBP18.33■□□□□ 0.52
CLN3-264ENST00000637985 SEMA4GQ9NTN9 838 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 FAM217BQ9NTX9 383 aaPredicted RBP18.33■□□□□ 0.52
CLN3-264ENST00000637985 TCEAL9Q9UHQ7 104 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 PRG3Q9Y2Y8 225 aaPredicted RBP18.33■□□□□ 0.52
CLN3-264ENST00000637985 SAMM50Q9Y512 469 aa18.33■□□□□ 0.52
CLN3-264ENST00000637985 ZFYVE26Q68DK2 2539 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 CNTNAP5Q8WYK1 1306 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 IGKV6-21A0A0C4DH24 114 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 SMCO2A6NFE2 343 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 NEFLP07196 543 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 HSPA4P34932 840 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 NRLP54845 237 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 SETQ01105 290 aaPredicted RBP18.32■□□□□ 0.52
CLN3-264ENST00000637985 PRR23CQ6ZRP0 262 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 CATSPER4Q7RTX7 472 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 GRASPQ7Z6J2 395 aaPredicted RBP18.32■□□□□ 0.52
CLN3-264ENST00000637985 ZNF410Q86VK4 478 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 FGF13Q92913 245 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 CEP89Q96ST8 783 aa18.32■□□□□ 0.52
CLN3-264ENST00000637985 SPEGQ15772 3267 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 KLF18A0A0U1RQI7 1052 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 WDR64B1ANS9 1081 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 hCG_1984214I3L0E3 225 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 REC8O95072 547 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 FGD1P98174 961 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 FUT2Q10981 343 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 CSRP2Q16527 193 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 UGCGQ16739 394 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 N4BP2L1Q5TBK1 243 aaPredicted RBP18.31■□□□□ 0.52
CLN3-264ENST00000637985 MAMSTRQ6ZN01 415 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 TPRG1Q6ZUI0 275 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms