RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 STXBP5LQ9Y2K9 1186 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 MRPL42Q9Y6G3 142 aaKnown RBP10.86□□□□□ -0.67
CLN3-261ENST00000637686 CHD7Q9P2D1 2997 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 MYO9BQ13459 2157 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 A0A1B0GUA9 196 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 MEIS3P2A8K0S8 358 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 K7ERI5 159 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 ACKR2O00590 384 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 SLC16A4O15374 487 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 HOXA2O43364 376 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 LPXNO60711 386 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 ZNF623O75123 536 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 EDN1P05305 212 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 KRT18P05783 430 aaKnown RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 CTNNB1P35222 781 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 BMPR1AP36894 532 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 RAB27AP51159 221 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 EFNA5P52803 228 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 ZNF445P59923 1031 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 AMPD3Q01432 767 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 PRPF4BQ13523 1007 aaKnown RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 FAM187BQ17R55 369 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 CLLU1OSQ5K130 101 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 SPOUT1Q5T280 376 aaKnown RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 CAVIN1Q6NZI2 390 aaKnown RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 LRRC55Q6ZSA7 311 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 SV2BQ7L1I2 683 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 CEP57L1Q8IYX8 460 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 ABI1Q8IZP0 508 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 CNNM3Q8NE01 707 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 FBXO22Q8NEZ5 403 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 HELQQ8TDG4 1101 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 GDPD5Q8WTR4 605 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 CLP1Q92989 425 aaKnown RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 PGBD4Q96DM1 585 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 CCDC51Q96ER9 411 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 PRIMPOLQ96LW4 560 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 SAMD11Q96NU1 681 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 GTPBP4Q9BZE4 634 aaKnown RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 TMEM117Q9H0C3 514 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 TNMDQ9H2S6 317 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 ZHX3Q9H4I2 956 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 C17orf75Q9HAS0 396 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 TYW1Q9NV66 732 aaKnown RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 ARHGAP28Q9P2N2 729 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 HCSTQ9UBK5 93 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 ODF2LQ9ULJ1 636 aa10.85□□□□□ -0.67
CLN3-261ENST00000637686 FNDC1Q4ZHG4 1894 aaPredicted RBP10.85□□□□□ -0.67
CLN3-261ENST00000637686 CNTNAP2Q9UHC6 1331 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 MYMKA6NI61 221 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 OFD1O75665 1012 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 FAM13AO94988 1023 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 NPTXRO95502 500 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 SMTNP53814 917 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 TMEM132AQ24JP5 1023 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 NT5DC1Q5TFE4 455 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 SLC27A1Q6PCB7 646 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 AGMOQ6ZNB7 445 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 DYMQ7RTS9 669 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 MRPL10Q7Z7H8 261 aaKnown RBP10.84□□□□□ -0.67
CLN3-261ENST00000637686 MYCT1Q8N699 235 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 SMG8Q8ND04 991 aaKnown RBP10.84□□□□□ -0.67
CLN3-261ENST00000637686 SPIRE2Q8WWL2 714 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 DHX58Q96C10 678 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 NTPCRQ9BSD7 190 aaKnown RBP10.84□□□□□ -0.67
CLN3-261ENST00000637686 TRIM6Q9C030 488 aaPredicted RBP10.84□□□□□ -0.67
CLN3-261ENST00000637686 PDZD7Q9H5P4 517 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 TMEM134Q9H6X4 195 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 CWH43Q9H720 699 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 KBTBD4Q9NVX7 518 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 LARSQ9P2J5 1176 aaKnown RBP10.84□□□□□ -0.67
CLN3-261ENST00000637686 RWDD3Q9Y3V2 267 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 HES2Q9Y543 173 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 IPPQ9Y573 584 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 PHLPP2Q6ZVD8 1323 aa10.84□□□□□ -0.67
CLN3-261ENST00000637686 MYH11P35749 1972 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 NLRC5Q86WI3 1866 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 C5orf67F2Z3F1 127 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 H3BNC9 293 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 N4BP3O15049 544 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 GTPBP6O43824 516 aaPredicted RBP10.83□□□□□ -0.68
CLN3-261ENST00000637686 TBCAO75347 108 aaKnown RBP10.83□□□□□ -0.68
CLN3-261ENST00000637686 RB1P06400 928 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 ITGA4P13612 1032 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 ZNF131P52739 623 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 GPM6BQ13491 265 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 POSTNQ15063 836 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 ZSCAN23Q3MJ62 389 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 NOMO2Q5JPE7 1267 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 ATF7IP2Q5U623 682 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 EEF1DP3Q658K8 133 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 GLB1LQ6UWU2 654 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 TAS1R3Q7RTX0 852 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 LRRC43Q8N309 656 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 TRIML1Q8N9V2 468 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 TMEM161BQ8NDZ6 487 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 SPATA20Q8TB22 786 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 DDX12PQ92771 950 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 TARS2Q9BW92 718 aaKnown RBP10.83□□□□□ -0.68
CLN3-261ENST00000637686 APOL6Q9BWW8 343 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms