RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 DUSP6Q16828 381 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 EP400NLQ6ZTU2 488 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 C1orf186Q6ZWK4 172 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 RBM23Q86U06 439 aaKnown RBP21.26■□□□□ 0.99
CLN3-260ENST00000637578 TMEM173Q86WV6 379 aaPredicted RBP21.26■□□□□ 0.99
CLN3-260ENST00000637578 DAW1Q8N136 415 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 IGSF21Q96ID5 467 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 MSLNLQ96KJ4 702 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 AK8Q96MA6 479 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 POLD4Q9HCU8 107 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 CLEC1BQ9P126 229 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 DNAJB4Q9UDY4 337 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 HES2Q9Y543 173 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 FSD2A1L4K1 749 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 ARL5CA6NH57 179 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 TTLL13PA6NNM8 815 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 ACKR2O00590 384 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 SLC26A4O43511 780 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 GLP2RO95838 553 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 BMP15O95972 392 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 SLC11A1P49279 550 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 RESTQ13127 1097 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 MAPK6Q16659 721 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 RINT1Q6NUQ1 792 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 DDX53Q86TM3 631 aaKnown RBP21.25■□□□□ 0.99
CLN3-260ENST00000637578 FAM178BQ8IXR5 827 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 IFT74Q96LB3 600 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 NT5C3AQ9H0P0 336 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 GIT1Q9Y2X7 761 aa21.25■□□□□ 0.99
CLN3-260ENST00000637578 ZMYM2Q9UBW7 1377 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 PER2O15055 1255 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 IL9P15248 144 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 EFNA5P52803 228 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 TMEM184AQ6ZMB5 413 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 CDR2LQ86X02 465 aaPredicted RBP21.24■□□□□ 0.99
CLN3-260ENST00000637578 MRPL43Q8N983 215 aaKnown RBP21.24■□□□□ 0.99
CLN3-260ENST00000637578 GSTCDQ8NEC7 633 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 DEPTORQ8TB45 409 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 BCL7CQ8WUZ0 217 aaPredicted RBP21.24■□□□□ 0.99
CLN3-260ENST00000637578 TMEM169Q96HH4 297 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 TMEM175Q9BSA9 504 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 RUSC1Q9BVN2 902 aa21.24■□□□□ 0.99
CLN3-260ENST00000637578 NXF3Q9H4D5 531 aaKnown RBP21.24■□□□□ 0.99
CLN3-260ENST00000637578 DAXXQ9UER7 740 aaPredicted RBP21.24■□□□□ 0.99
CLN3-260ENST00000637578 HIDE1A8MVS5 230 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 POMCP01189 267 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 DSC1Q08554 894 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 COASYQ13057 564 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 MAPK7Q13164 816 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 TMEM119Q4V9L6 283 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 FOXD4L5Q5VV16 416 aaPredicted RBP21.23■□□□□ 0.99
CLN3-260ENST00000637578 PLPP4Q5VZY2 271 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 TMC7Q7Z402 723 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 SYT2Q8N9I0 419 aaPredicted RBP21.23■□□□□ 0.99
CLN3-260ENST00000637578 VN1R2Q8NFZ6 395 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 FOXD4L4Q8WXT5 416 aaPredicted RBP21.23■□□□□ 0.99
CLN3-260ENST00000637578 GAD1Q99259 594 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 TRIM6Q9C030 488 aaPredicted RBP21.23■□□□□ 0.99
CLN3-260ENST00000637578 PDZD7Q9H5P4 517 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 ENTPD7Q9NQZ7 604 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 MIOSQ9NXC5 875 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 BDP1A6H8Y1 2624 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 HIP1RO75146 1068 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 NPTXRO95502 500 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 EDN1P05305 212 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 PRKCBP05771 671 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 PDIA4P13667 645 aaKnown RBP21.23■□□□□ 0.99
CLN3-260ENST00000637578 GUCY2CP25092 1073 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 PRPF4BQ13523 1007 aaKnown RBP21.23■□□□□ 0.99
CLN3-260ENST00000637578 SF3A1Q15459 793 aaKnown RBP21.23■□□□□ 0.99
CLN3-260ENST00000637578 COLGALT2Q8IYK4 626 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 HACE1Q8IYU2 909 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 ZFP42Q96MM3 310 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 KIFC3Q9BVG8 833 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 TIPINQ9BVW5 301 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 GBP3Q9H0R5 595 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 C17orf75Q9HAS0 396 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 CD207Q9UJ71 328 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 FAM50BQ9Y247 325 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 IRAK3Q9Y616 596 aa21.23■□□□□ 0.99
CLN3-260ENST00000637578 C2orf71A6NGG8 1288 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 N4BP3O15049 544 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 ALDH2P05091 517 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 MLH1P40692 756 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 NPTX2P47972 431 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 NDUFV1P49821 464 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 SMC1AQ14683 1233 aaKnown RBP21.22■□□□□ 0.99
CLN3-260ENST00000637578 SMAD2Q15796 467 aaKnown RBP21.22■□□□□ 0.99
CLN3-260ENST00000637578 VPS52Q8N1B4 723 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 NTPCRQ9BSD7 190 aaKnown RBP21.22■□□□□ 0.99
CLN3-260ENST00000637578 VN1R3Q9BXE9 311 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 ZBP1Q9H171 429 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 CD320Q9NPF0 282 aa21.22■□□□□ 0.99
CLN3-260ENST00000637578 MBTPS2O43462 519 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 ZSCAN22P10073 491 aaPredicted RBP21.21■□□□□ 0.99
CLN3-260ENST00000637578 AKAP5P24588 427 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 LONP1P36776 959 aaKnown RBP21.21■□□□□ 0.99
CLN3-260ENST00000637578 SLC12A3P55017 1021 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 SMAD4Q13485 552 aaKnown RBP21.21■□□□□ 0.99
CLN3-260ENST00000637578 PTPAQ15257 358 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms