RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 GAP43P17677 238 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 LAG3P18627 525 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 CMA1P23946 247 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 BMPR1AP36894 532 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 GIT2Q14161 759 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 MCM6Q14566 821 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 EPC2Q52LR7 807 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 SPECC1Q5M775 1068 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 ZPBP2Q6X784 338 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 TMEM192Q8IY95 271 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 TMEM161BQ8NDZ6 487 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 FBXO22Q8NEZ5 403 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 HVCN1Q96D96 273 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 CASD1Q96PB1 797 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 PLIN2Q99541 437 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 MRPL4Q9BYD3 311 aaKnown RBP20.12■□□□□ 0.81
CLN3-259ENST00000637551 OLFML3Q9NRN5 406 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 RNF19AQ9NV58 838 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 KBTBD4Q9NVX7 518 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 STK39Q9UEW8 545 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 TNFSF13BQ9Y275 285 aa20.12■□□□□ 0.81
CLN3-259ENST00000637551 A0A1W2PQ27 194 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 A0A1W2PQ64 194 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 A0A1W2PQD8 194 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 FRMD3A2A2Y4 597 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 CCDC169A6NNP5 214 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 H3BNC9 293 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 FAM13AO94988 1023 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 ARHGEF15O94989 841 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 KRT18P05783 430 aaKnown RBP20.11■□□□□ 0.81
CLN3-259ENST00000637551 PPM1AP35813 382 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 MRPS5P82675 430 aaKnown RBP20.11■□□□□ 0.81
CLN3-259ENST00000637551 UBE3AQ05086 875 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 ALCAMQ13740 583 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 PPM1EQ8WY54 764 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 TRIM6Q9C030 488 aaPredicted RBP20.11■□□□□ 0.81
CLN3-259ENST00000637551 GIT1Q9Y2X7 761 aa20.11■□□□□ 0.81
CLN3-259ENST00000637551 GTPBP6O43824 516 aaPredicted RBP20.1■□□□□ 0.81
CLN3-259ENST00000637551 MYL1P05976 194 aa20.1■□□□□ 0.81
CLN3-259ENST00000637551 STRN3Q13033 797 aa20.1■□□□□ 0.81
CLN3-259ENST00000637551 CLLU1OSQ5K130 101 aa20.1■□□□□ 0.81
CLN3-259ENST00000637551 RSAD1Q9HA92 442 aa20.1■□□□□ 0.81
CLN3-259ENST00000637551 IPPQ9Y573 584 aa20.1■□□□□ 0.81
CLN3-259ENST00000637551 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.1■□□□□ 0.81
CLN3-259ENST00000637551 PRRC2BQ5JSZ5 2229 aaKnown RBP20.1■□□□□ 0.81
CLN3-259ENST00000637551 TBKBP1A7MCY6 615 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 TRAK2O60296 914 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 PIGRP01833 764 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 PTPROQ16827 1216 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 ATF7IP2Q5U623 682 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 SMG8Q8ND04 991 aaKnown RBP20.09■□□□□ 0.81
CLN3-259ENST00000637551 URGCPQ8TCY9 931 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 ARNTL2Q8WYA1 636 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 DDX12PQ92771 950 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 PRDM12Q9H4Q4 367 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 PDZD7Q9H5P4 517 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 LZTS1Q9Y250 596 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 ARIH1Q9Y4X5 557 aaPredicted RBP20.09■□□□□ 0.81
CLN3-259ENST00000637551 PCDHB12Q9Y5F1 795 aa20.09■□□□□ 0.81
CLN3-259ENST00000637551 MRPL42Q9Y6G3 142 aaKnown RBP20.09■□□□□ 0.81
CLN3-259ENST00000637551 TDRD15B5MCY1 1934 aaKnown RBP20.08■□□□□ 0.81
CLN3-259ENST00000637551 A0A087X0B3 334 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 B4GALT5O43286 388 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 LPXNO60711 386 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 TOM1L1O75674 476 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 FGFR1P11362 822 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 ITGA4P13612 1032 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 PROZP22891 400 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 KYAT1Q16773 422 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 NOMO2Q5JPE7 1267 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 AGMOQ6ZNB7 445 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 FAM178BQ8IXR5 827 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 DNAJC19Q96DA6 116 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 ACO2Q99798 780 aaKnown RBP20.08■□□□□ 0.81
CLN3-259ENST00000637551 C17orf80Q9BSJ5 609 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 C1QTNF1Q9BXJ1 281 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 PTPRHQ9HD43 1115 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 KCNH3Q9ULD8 1083 aa20.08■□□□□ 0.81
CLN3-259ENST00000637551 SLC16A4O15374 487 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 OFD1O75665 1012 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 CTNNB1P35222 781 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 GTF2BQ00403 316 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 TAS1R3Q7RTX0 852 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 HAUS6Q7Z4H7 955 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 MYCT1Q8N699 235 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 MRPL38Q96DV4 380 aaKnown RBP20.07■□□□□ 0.8
CLN3-259ENST00000637551 CPB2Q96IY4 423 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 FIZ1Q96SL8 496 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 KIFC3Q9BVG8 833 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 CWH43Q9H720 699 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 HPSEQ9Y251 543 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 CITO14578 2027 aa20.07■□□□□ 0.8
CLN3-259ENST00000637551 FSD2A1L4K1 749 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 MYMKA6NI61 221 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 SLFN14P0C7P3 912 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 MCF2P10911 925 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 POU5F1Q01860 360 aaKnown RBP20.06■□□□□ 0.8
CLN3-259ENST00000637551 PLCB3Q01970 1234 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 RAD51AP2Q09MP3 1159 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 FOXD4L6Q3SYB3 417 aaPredicted RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms