RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CDR2LQ86X02 465 aaPredicted RBP17.99■□□□□ 0.47
CLN3-246ENST00000636228 ZFP42Q96MM3 310 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 GAD1Q99259 594 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 HSD17B14Q9BPX1 270 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 TMEM175Q9BSA9 504 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 EMILIN2Q9BXX0 1053 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 KANSL3Q9P2N6 904 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 PCDHA12Q9UN75 941 aa17.99■□□□□ 0.47
CLN3-246ENST00000636228 CARNS1A5YM72 827 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 ARL5CA6NH57 179 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 GAS2O43903 313 aaKnown RBP17.98■□□□□ 0.47
CLN3-246ENST00000636228 JAK2O60674 1132 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 TXKP42681 527 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 SCNN1GP51170 649 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 CAPSQ13938 189 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 ANKRD1Q15327 319 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 MAEAQ7L5Y9 396 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 PPFIBP1Q86W92 1011 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 COLGALT2Q8IYK4 626 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 PIGOQ8TEQ8 1089 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 PRRX2Q99811 253 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 TTC12Q9H892 705 aaPredicted RBP17.98■□□□□ 0.47
CLN3-246ENST00000636228 MRPL17Q9NRX2 175 aaKnown RBP17.98■□□□□ 0.47
CLN3-246ENST00000636228 MARCH5Q9NX47 278 aa17.98■□□□□ 0.47
CLN3-246ENST00000636228 H0Y858 1186 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 B4GALT5O43286 388 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 AKAP5P24588 427 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 ARL2P36404 184 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 MBTD1Q05BQ5 628 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 MXD4Q14582 209 aaPredicted RBP17.97■□□□□ 0.47
CLN3-246ENST00000636228 AMHR2Q16671 573 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 NOTUMQ6P988 496 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 GPR149Q86SP6 731 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 DIS3L2Q8IYB7 885 aaKnown RBP17.97■□□□□ 0.47
CLN3-246ENST00000636228 UBALD2Q8IYN6 164 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 ZDHHC14Q8IZN3 488 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 CNNM3Q8NE01 707 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 NSUN7Q8NE18 718 aaKnown RBP17.97■□□□□ 0.47
CLN3-246ENST00000636228 RABGGTAQ92696 567 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 GTF3C6Q969F1 213 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 CSRNP2Q9H175 543 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 SFXN1Q9H9B4 322 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 BRMS1Q9HCU9 246 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 UBN1Q9NPG3 1134 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 PIEZO1Q92508 2521 aa17.97■□□□□ 0.47
CLN3-246ENST00000636228 LYPLA2O95372 231 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 SOD2P04179 222 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 SPATA31D3P0C874 917 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 ARF4P18085 180 aaPredicted RBP17.96■□□□□ 0.47
CLN3-246ENST00000636228 ATP2B1P20020 1258 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 GLRA2P23416 452 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 AXLP30530 894 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 NCBP1Q09161 790 aaKnown RBP17.96■□□□□ 0.47
CLN3-246ENST00000636228 TFDP1Q14186 410 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 SPATA31D4Q6ZUB0 917 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 ATOH1Q92858 354 aaPredicted RBP17.96■□□□□ 0.47
CLN3-246ENST00000636228 B3GALT6Q96L58 329 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 NXF3Q9H4D5 531 aaKnown RBP17.96■□□□□ 0.47
CLN3-246ENST00000636228 GPRC5CQ9NQ84 441 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 ANKEF1Q9NU02 776 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 KLK14Q9P0G3 267 aa17.96■□□□□ 0.47
CLN3-246ENST00000636228 TEX28O15482 410 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 NEMFO60524 1076 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 DGAT1O75907 488 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 NPTXRO95502 500 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 URODP06132 367 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 RARRES1P49788 294 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 ANAPC15P60006 121 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 GUCY1B3Q02153 619 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 DSC1Q08554 894 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 PLCD3Q8N3E9 789 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 TMEM105Q8N8V8 129 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 CCDC43Q96MW1 224 aaKnown RBP17.95■□□□□ 0.46
CLN3-246ENST00000636228 MTMR9Q96QG7 549 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 RPS6KC1Q96S38 1066 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 HERC2P3Q9BVR0 1158 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 TRIM6Q9C030 488 aaPredicted RBP17.95■□□□□ 0.46
CLN3-246ENST00000636228 POLR3FQ9H1D9 316 aaPredicted RBP17.95■□□□□ 0.46
CLN3-246ENST00000636228 TMEM60Q9H2L4 133 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 MAN1C1Q9NR34 630 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 CACNG4Q9UBN1 327 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 USTQ9Y2C2 406 aa17.95■□□□□ 0.46
CLN3-246ENST00000636228 POTEMA6NI47 508 aa17.94■□□□□ 0.46
CLN3-246ENST00000636228 USO1O60763 962 aaKnown RBP17.94■□□□□ 0.46
CLN3-246ENST00000636228 KIAA0319Q5VV43 1072 aa17.94■□□□□ 0.46
CLN3-246ENST00000636228 IFNLR1Q8IU57 520 aaPredicted RBP17.94■□□□□ 0.46
CLN3-246ENST00000636228 ACSF2Q96CM8 615 aaPredicted RBP17.94■□□□□ 0.46
CLN3-246ENST00000636228 STK39Q9UEW8 545 aa17.94■□□□□ 0.46
CLN3-246ENST00000636228 CCDC195A0A1B0GUA6 201 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 INPPL1O15357 1258 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 EFEMP2O95967 443 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 SPATA31C1P0DKV0 1188 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 GLUD2P49448 558 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 NEK4P51957 841 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 POU5F1BQ06416 359 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 ST3GAL1Q11201 340 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 CCDC149Q6ZUS6 474 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 PALB2Q86YC2 1186 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 GLYCTKQ8IVS8 523 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 RNF168Q8IYW5 571 aaPredicted RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms