RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 NLRP11P59045 1033 aaKnown RBP15.46■□□□□ 0.07
CLN3-242ENST00000635958 KCNJ12Q14500 433 aa15.46■□□□□ 0.07
CLN3-242ENST00000635958 MAPK6Q16659 721 aa15.46■□□□□ 0.07
CLN3-242ENST00000635958 ZPBP2Q6X784 338 aa15.46■□□□□ 0.07
CLN3-242ENST00000635958 SERINC5Q86VE9 423 aa15.46■□□□□ 0.07
CLN3-242ENST00000635958 CREBRFQ8IUR6 639 aa15.46■□□□□ 0.07
CLN3-242ENST00000635958 CCAR2Q8N163 923 aaKnown RBP15.46■□□□□ 0.07
CLN3-242ENST00000635958 ZNF397Q8NF99 534 aaPredicted RBP15.46■□□□□ 0.07
CLN3-242ENST00000635958 DNAJB3Q8WWF6 145 aa15.46■□□□□ 0.07
CLN3-242ENST00000635958 CTAGE1Q96RT6 745 aa15.46■□□□□ 0.07
CLN3-242ENST00000635958 FDXACB1Q9BRP7 624 aaPredicted RBP15.46■□□□□ 0.07
CLN3-242ENST00000635958 ANKRD63C9JTQ0 380 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 ACKR2O00590 384 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 CLIC2O15247 247 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 ADSSP30520 456 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 CCZ1BP86790 482 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 CCZ1P86791 482 aaPredicted RBP15.45■□□□□ 0.06
CLN3-242ENST00000635958 MBTD1Q05BQ5 628 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 HSP90AA4PQ58FG1 418 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 SLC39A4Q6P5W5 647 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 SRGAP1Q7Z6B7 1085 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 EEF2KMTQ96G04 330 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 MKNK1Q9BUB5 465 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 SLC16A3O15427 465 aaKnown RBP15.45■□□□□ 0.06
CLN3-242ENST00000635958 SGPL1O95470 568 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 GARTP22102 1010 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 KRT31Q15323 416 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 FAM47CQ5HY64 1035 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 VTI1AQ96AJ9 217 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 CNOT6LQ96LI5 555 aaKnown RBP15.45■□□□□ 0.06
CLN3-242ENST00000635958 FAM49AQ9H0Q0 323 aaPredicted RBP15.45■□□□□ 0.06
CLN3-242ENST00000635958 MINDY3Q9H8M7 445 aa15.45■□□□□ 0.06
CLN3-242ENST00000635958 MAGEC2Q9UBF1 373 aaPredicted RBP15.45■□□□□ 0.06
CLN3-242ENST00000635958 BRCA2P51587 3418 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 A0A0U1RQG5 324 aaPredicted RBP15.44■□□□□ 0.06
CLN3-242ENST00000635958 TISP43B9A030 160 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 HNRNPDLO14979 420 aaKnown RBP15.44■□□□□ 0.06
CLN3-242ENST00000635958 SLU7O95391 586 aaKnown RBP15.44■□□□□ 0.06
CLN3-242ENST00000635958 EDN1P05305 212 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 PRKCBP05771 671 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 MCCD1P59942 119 aaPredicted RBP15.44■□□□□ 0.06
CLN3-242ENST00000635958 CBX1P83916 185 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 PCBP1Q15365 356 aaKnown RBP eCLIP15.44■□□□□ 0.06
CLN3-242ENST00000635958 FRMD5Q7Z6J6 570 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 ANKRD20A12PQ8NF67 263 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 NLRP7Q8WX94 980 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 TSC1Q92574 1164 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 BORCS6Q96GS4 357 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 MRPL4Q9BYD3 311 aaKnown RBP15.44■□□□□ 0.06
CLN3-242ENST00000635958 STARD7Q9NQZ5 370 aa15.44■□□□□ 0.06
CLN3-242ENST00000635958 PRMT7Q9NVM4 692 aaPredicted RBP15.44■□□□□ 0.06
CLN3-242ENST00000635958 DNAH12Q6ZR08 3092 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 A0A1B0GTH6 734 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 INO80B-WBP1J3KQ70 363 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 ARVCFO00192 962 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 MAPK13O15264 365 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 AKAP3O75969 853 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 SERPINC1P01008 464 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 MYCP01106 439 aaPredicted RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 IQCF3P0C7M6 154 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 CAPN2P17655 700 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 CDK7P50613 346 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 UBASH3AP57075 661 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 PTK7Q13308 1070 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 PTGISQ16647 500 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 AMHR2Q16671 573 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 KIZQ2M2Z5 673 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 SLFN12LQ6IEE8 588 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 ZNF668Q96K58 619 aaPredicted RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 ACO2Q99798 780 aaKnown RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 CBWD1Q9BRT8 395 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 TARS2Q9BW92 718 aaKnown RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 GCOM2Q9BZD3 368 aaPredicted RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 INO80BQ9C086 356 aaPredicted RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 IFNKQ9P0W0 207 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 KIAA0391O15091 583 aaKnown RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 PSMC2P35998 433 aaKnown RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 CASP4P49662 377 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 LIG4P49917 911 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 MNX1P50219 401 aaPredicted RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 CRYBB1P53674 252 aaPredicted RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 NR1I3Q14994 352 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 ARMCX5Q6P1M9 558 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 TSHZ1Q6ZSZ6 1077 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 RSPH3Q86UC2 560 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 TRIM59Q8IWR1 403 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 XXYLT1Q8NBI6 393 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 U2AF1L4Q8WU68 220 aaKnown RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 FBXL18Q96ME1 805 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 XPO4Q9C0E2 1151 aaKnown RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 CDHR5Q9HBB8 845 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 METTL14Q9HCE5 456 aaKnown RBP15.43■□□□□ 0.06
CLN3-242ENST00000635958 PTPRHQ9HD43 1115 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 HSPBP1Q9NZL4 362 aa15.43■□□□□ 0.06
CLN3-242ENST00000635958 TTLL13PA6NNM8 815 aa15.42■□□□□ 0.06
CLN3-242ENST00000635958 TOM1L1O75674 476 aa15.42■□□□□ 0.06
CLN3-242ENST00000635958 DARSP14868 501 aaKnown RBP15.42■□□□□ 0.06
CLN3-242ENST00000635958 PROZP22891 400 aa15.42■□□□□ 0.06
CLN3-242ENST00000635958 SFPQP23246 707 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLN3-242ENST00000635958 EIF4BP23588 611 aaKnown RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms