RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GPM6BQ13491 265 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 APBB1IPQ7Z5R6 666 aaPredicted RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 MYCT1Q8N699 235 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 GDPD5Q8WTR4 605 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 LEO1Q8WVC0 666 aaPredicted RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 ADPGKQ9BRR6 497 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 IPPQ9Y573 584 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 PCDHB12Q9Y5F1 795 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 TRIP11Q15643 1979 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 A0A087X0B3 334 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 SCP2P22307 547 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 STRN3Q13033 797 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 IQUBQ8NA54 791 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 CUEDC2Q9H467 287 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 ZHX3Q9H4I2 956 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 LMCD1Q9NZU5 365 aa22.79■■□□□ 1.24
CLN3-240ENST00000631023 NPTXRO95502 500 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 ZNF131P52739 623 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 CSPP1Q1MSJ5 1256 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 AGMOQ6ZNB7 445 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 CDR2LQ86X02 465 aaPredicted RBP22.78■■□□□ 1.24
CLN3-240ENST00000631023 SMG8Q8ND04 991 aaKnown RBP22.78■■□□□ 1.24
CLN3-240ENST00000631023 URGCPQ8TCY9 931 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 P2RX5Q93086 422 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 PYM1Q9BRP8 204 aaKnown RBP22.78■■□□□ 1.24
CLN3-240ENST00000631023 MRPL4Q9BYD3 311 aaKnown RBP22.78■■□□□ 1.24
CLN3-240ENST00000631023 LRRC27Q9C0I9 530 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 RSAD1Q9HA92 442 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 KANSL3Q9P2N6 904 aa22.78■■□□□ 1.24
CLN3-240ENST00000631023 LPXNO60711 386 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 OFD1O75665 1012 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 LAG3P18627 525 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 NOMO2Q5JPE7 1267 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 ATF7IP2Q5U623 682 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 RESP18Q5W5W9 173 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 ADALQ6DHV7 355 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 DYMQ7RTS9 669 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 TMEM161BQ8NDZ6 487 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 MAFAQ8NHW3 353 aaPredicted RBP22.77■■□□□ 1.24
CLN3-240ENST00000631023 DDX12PQ92771 950 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 PDZD7Q9H5P4 517 aa22.77■■□□□ 1.24
CLN3-240ENST00000631023 TTLL13PA6NNM8 815 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 MEIS3P2A8K0S8 358 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 ABCD1P33897 745 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 NCKAP1LP55160 1127 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 AMPD3Q01432 767 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 PTPROQ16827 1216 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 NT5DC1Q5TFE4 455 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 LRRC55Q6ZSA7 311 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 SLC17A8Q8NDX2 589 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 DHX58Q96C10 678 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 CWH43Q9H720 699 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 INPP5FQ9Y2H2 1132 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 MTCH2Q9Y6C9 303 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 CITO14578 2027 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 CARNS1A5YM72 827 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 MYMKA6NI61 221 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 TRAK2O60296 914 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 MAPTP10636 758 aaKnown RBP22.76■■□□□ 1.23
CLN3-240ENST00000631023 RNASELQ05823 741 aaKnown RBP22.76■■□□□ 1.23
CLN3-240ENST00000631023 DCAF4L1Q3SXM0 396 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 HAUS6Q7Z4H7 955 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 FAM178BQ8IXR5 827 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 APOL6Q9BWW8 343 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 TNMDQ9H2S6 317 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 NXF3Q9H4D5 531 aaKnown RBP22.76■■□□□ 1.23
CLN3-240ENST00000631023 TNFSF13BQ9Y275 285 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 USP20Q9Y2K6 914 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 GIT1Q9Y2X7 761 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 HES2Q9Y543 173 aa22.76■■□□□ 1.23
CLN3-240ENST00000631023 PLXNA4Q9HCM2 1894 aa22.75■■□□□ 1.23
CLN3-240ENST00000631023 POLR2DO15514 142 aaKnown RBP22.75■■□□□ 1.23
CLN3-240ENST00000631023 E2F4Q16254 413 aa22.75■■□□□ 1.23
CLN3-240ENST00000631023 COLGALT1Q8NBJ5 622 aa22.75■■□□□ 1.23
CLN3-240ENST00000631023 CHAMP1Q96JM3 812 aa22.75■■□□□ 1.23
CLN3-240ENST00000631023 ACO2Q99798 780 aaKnown RBP22.75■■□□□ 1.23
CLN3-240ENST00000631023 LMAN2LQ9H0V9 348 aa22.75■■□□□ 1.23
CLN3-240ENST00000631023 MAGEF1Q9HAY2 307 aa22.75■■□□□ 1.23
CLN3-240ENST00000631023 EDN1P05305 212 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 GAP43P17677 238 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 CMA1P23946 247 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 ALDH7A1P49419 539 aaKnown RBP22.74■■□□□ 1.23
CLN3-240ENST00000631023 TAS1R3Q7RTX0 852 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 KLHL23Q8NBE8 558 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 KCNN1Q92952 543 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 MRPL38Q96DV4 380 aaKnown RBP22.74■■□□□ 1.23
CLN3-240ENST00000631023 ZNF558Q96NG5 402 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 TCHPQ9BT92 498 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 TARS2Q9BW92 718 aaKnown RBP22.74■■□□□ 1.23
CLN3-240ENST00000631023 RNF39Q9H2S5 420 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 TBC1D13Q9NVG8 400 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 KBTBD4Q9NVX7 518 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 SEL1LQ9UBV2 794 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 PARP2Q9UGN5 583 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 KCNH3Q9ULD8 1083 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 PLAGL2Q9UPG8 496 aa22.74■■□□□ 1.23
CLN3-240ENST00000631023 K7ENM7 598 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 PPM1AP35813 382 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 EEF1DP3Q658K8 133 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 KCNT2Q6UVM3 1135 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms