RNA–Protein interactions for RNA: ENST00000622045.4

SYNRG-231, Transcript of synergin gamma, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNRG, Length 3,859 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNRG-231	ENST00000622045	USP40	Q9NVE5	1235 aa		15.44	■□□□□ 0.06
SYNRG-231	ENST00000622045	TAS2R14	Q9NYV8	317 aa		15.44	■□□□□ 0.06
SYNRG-231	ENST00000622045	FRMD4B	Q9Y2L6	1034 aa		15.44	■□□□□ 0.06
SYNRG-231	ENST00000622045	LAMB1	P07942	1786 aa		15.44	■□□□□ 0.06
SYNRG-231	ENST00000622045	RPA1	P27694	616 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	TTC27	Q6P3X3	843 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	INTS8	Q75QN2	995 aa	Known RBP	15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	TTC8	Q8TAM2	541 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	KRT35	Q92764	455 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	STMN4	Q9H169	189 aa	Predicted RBP	15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	SIX2	Q9NPC8	291 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	DLGAP2	Q9P1A6	1054 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	SCN7A	Q01118	1682 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	HLA-DOA	P06340	250 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	TRIM49	P0CI25	452 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	TRIM49C	P0CI26	452 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	RPS6KA3	P51812	740 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	PTF1A	Q7RTS3	328 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	GBP7	Q8N8V2	638 aa	Predicted RBP	15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	RUSC1	Q9BVN2	902 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	STK33	Q9BYT3	514 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	CARD9	Q9H257	536 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	C2CD2	Q9Y426	696 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	PFAS	O15067	1338 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	IRS2	Q9Y4H2	1338 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045		A0A1B0GVG6	124 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	TMEM253	P0C7T8	217 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	BRAF	P15056	766 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	ATP2B4	P23634	1241 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	RFC5	P40937	340 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	SCNN1D	P51172	638 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	RNF220	Q5VTB9	566 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	ECHDC2	Q86YB7	292 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	SYCP3	Q8IZU3	236 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	UBL4B	Q8N7F7	174 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	TAOK3	Q9H2K8	898 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	CCDC88A	Q3V6T2	1871 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	PHLPP1	O60346	1717 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	TCRBV7S2A1N4T	A0A589	114 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	ASRGL1	Q7L266	308 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	ZC3H3	Q8IXZ2	948 aa	Known RBP	15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	SUPT20H	Q8NEM7	779 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	ERP27	Q96DN0	273 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	CCDC134	Q9H6E4	229 aa		15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	CCNL1	Q9UK58	526 aa	Predicted RBP	15.43	■□□□□ 0.06
SYNRG-231	ENST00000622045	COL22A1	Q8NFW1	1626 aa	Predicted RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	FAM187A	A6NFU0	413 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	AHCYL1	O43865	530 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	FES	P07332	822 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	JAM2	P57087	298 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	CTTN	Q14247	550 aa	Known RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	MESD	Q14696	234 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	TRIP13	Q15645	432 aa	Predicted RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	NBPF20	Q3BBV1	942 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	VSTM1	Q6UX27	236 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	PALB2	Q86YC2	1186 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	DIS3	Q9Y2L1	958 aa	Known RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	ALG6	Q9Y672	507 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	ASTN1	O14525	1302 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	DOT1L	Q8TEK3	1739 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	SLC16A3	O15427	465 aa	Known RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	GM2A	P17900	193 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	PPP1R15B	Q5SWA1	713 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	CWF19L1	Q69YN2	538 aa	Known RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	DPY19L2P1	Q6NXN4	242 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	CCDC137	Q6PK04	289 aa	Known RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	PRELID2	Q8N945	189 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	ANKLE1	Q8NAG6	615 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	MYLK2	Q9H1R3	596 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	ATF5	Q9Y2D1	282 aa	Predicted RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	ANKRD33B	A6NCL7	494 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	FAM196B	A6NMK8	535 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045		G3V3G9	751 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	ENTPD5	O75356	428 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	SPATA31C1	P0DKV0	1188 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	FMO5	P49326	533 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	VPS41	P49754	854 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	DCAF8	Q5TAQ9	597 aa		15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	SRRM1	Q8IYB3	904 aa	Known RBP	15.42	■□□□□ 0.06
SYNRG-231	ENST00000622045	CNTNAP4	Q9C0A0	1308 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	EXOC3	O60645	756 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	HOXA13	P31271	388 aa	Predicted RBP	15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	SLFN13	Q68D06	897 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	CGB2	Q6NT52	195 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	SLC30A10	Q6XR72	485 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	ZDHHC14	Q8IZN3	488 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	UCMA	Q8WVF2	138 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	PWWP2A	Q96N64	755 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	RNPEPL1	Q9HAU8	725 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	DDX4	Q9NQI0	724 aa	Known RBP	15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	PTGIR	P43119	386 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	DHX34	Q14147	1143 aa	Known RBP	15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	CPNE8	Q86YQ8	564 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	CDC42EP4	Q9H3Q1	356 aa	Known RBP	15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	LIN7A	O14910	233 aa	Predicted RBP	15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	PEX11A	O75192	247 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	GJB6	O95452	261 aa		15.41	■□□□□ 0.06
SYNRG-231	ENST00000622045	CALB2	P22676	271 aa		15.41	■□□□□ 0.06

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms