RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 DGKDQ16760 1214 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 ANO4Q32M45 955 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 C9orf131Q5VYM1 1079 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 ITPRIPL1Q6GPH6 555 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 CLEC10AQ8IUN9 316 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 GLYCTKQ8IVS8 523 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 SRBD1Q8N5C6 995 aaKnown RBP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 RNF25Q96BH1 459 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 RGL1Q9NZL6 768 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 AGAP1Q9UPQ3 857 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 EMSYQ7Z589 1322 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 PI4K2BG5E9Z4 385 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 GOLGA8MH3BSY2 632 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 PIK3R2O00459 728 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 ART3Q13508 389 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 SNX17Q15036 470 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 RABGGTAQ92696 567 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 CALR3Q96L12 384 aaKnown RBP12.11□□□□□ -0.47
CLIP1-219ENST00000620786 DRC3Q9H069 523 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 TRPV6Q9H1D0 765 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 PLEKHA5Q9HAU0 1116 aa12.11□□□□□ -0.47
CLIP1-219ENST00000620786 NTSR2O95665 410 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 GFPT1Q06210 699 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TMEM132DQ14C87 1099 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 IMPG1Q17R60 797 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 NAALADL2Q58DX5 795 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 PPP4R4Q6NUP7 873 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 FMO2Q99518 471 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TIPINQ9BVW5 301 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 NDFIP2Q9NV92 336 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 SYNGAP1Q96PV0 1343 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 LGALS16A8MUM7 142 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 STXBP3O00186 592 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 RASGRF2O14827 1237 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 MGEA5O60502 916 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 SLC7A5Q01650 507 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ANKRD20A4Q4UJ75 823 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ANKRD20A8PQ5CZ79 823 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ANKRD20A2Q5SQ80 823 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ANKRD20A1Q5TYW2 823 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 CAPN7Q9Y6W3 813 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ACSL3O95573 720 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 HMBSP08397 361 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ATICP31939 592 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ATG16L1Q676U5 607 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF746Q6NUN9 644 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-219ENST00000620786 CCDC197Q8NCU1 140 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 RMDN1Q96DB5 314 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 RMDN2Q96LZ7 410 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 RRAGDQ9NQL2 400 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-219ENST00000620786 PRR12Q9ULL5 1215 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TMCC1O94876 653 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TRIM49P0CI25 452 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TRIM49CP0CI26 452 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 RFC1P35251 1148 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-219ENST00000620786 INPP1P49441 399 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ROR1Q01973 937 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ENOSF1Q7L5Y1 443 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 CHST13Q8NET6 341 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TTC8Q8TAM2 541 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 BCAS4Q8TDM0 211 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 DDX56Q9NY93 547 aaKnown RBP12.1□□□□□ -0.47
CLIP1-219ENST00000620786 UNC13BO14795 1591 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 UBE2Q2LH0YL09 131 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 DNAJC6O75061 913 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 NR3C2P08235 984 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 ATP1A3P13637 1013 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 EMC2Q15006 297 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TRIM68Q6AZZ1 485 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 C16orf86Q6ZW13 317 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 AGBL3Q8NEM8 1001 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 MAML1Q92585 1016 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 EGFL8Q99944 293 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 TECPR2O15040 1411 aa12.1□□□□□ -0.47
CLIP1-219ENST00000620786 LRRC7Q96NW7 1537 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 MIF4GDA9UHW6 222 aaKnown RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 POLRMTO00411 1230 aaKnown RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 MAGEB2O15479 319 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 DGAT1O75907 488 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 KRT7P08729 469 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 NMT1P30419 496 aaKnown RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 CDKL3Q8IVW4 592 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 ULK4Q96C45 1275 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 HMGB1P1B2RPK0 211 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 OR1G1P47890 313 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 RBP5P82980 135 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 GNASQ5JWF2 1037 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 DEFB132Q7Z7B7 95 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 SPATS2Q86XZ4 545 aaKnown RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 UBA6A0AVT1 1052 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 RGS2P41220 211 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 GOLPH3LQ9H4A5 285 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF212Q9UDV6 495 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 SNX9Q9Y5X1 595 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 ABCA6Q8N139 1617 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 KRT37O76014 449 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 SEC31AO94979 1220 aaKnown RBP12.09□□□□□ -0.47
CLIP1-219ENST00000620786 ASMTLO95671 621 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 CYP2C9P11712 490 aa12.09□□□□□ -0.47
CLIP1-219ENST00000620786 NOP14P78316 857 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms