RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ARIH2O95376 493 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 CTSHP09668 335 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 KIZQ2M2Z5 673 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 KLHDC7AQ5VTJ3 777 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 FBXO38Q6PIJ6 1188 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 GOLGA6L1Q8N7Z2 621 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 C7orf31Q8N865 590 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 BSNDQ8WZ55 320 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 DNAJC7Q99615 494 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 MANSC4A6NHS7 340 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-213ENST00000620219 NCK2O43639 380 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 SEC31AO94979 1220 aaKnown RBP16.99■□□□□ 0.31
CPSF1-213ENST00000620219 RFC5P40937 340 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 PASD1Q8IV76 773 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 FBXL13Q8NEE6 735 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 ATP8B4Q8TF62 1192 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 LMBR1Q8WVP7 490 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 TINF2Q9BSI4 451 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 CDC23Q9UJX2 597 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 BEX3Q00994 111 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 ACVR2BQ13705 512 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 DGKDQ16760 1214 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 DAW1Q8N136 415 aa16.99■□□□□ 0.31
CPSF1-213ENST00000620219 ATP1A1P05023 1023 aaKnown RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 FGFR4P22455 802 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 HLTFQ14527 1009 aaKnown RBP eCLIP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 MXD4Q14582 209 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 EPC2Q52LR7 807 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 IER5Q5VY09 327 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 PACSIN2Q9UNF0 486 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 HYOU1Q9Y4L1 999 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CYP26A1O43174 497 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 ZEB2O60315 1214 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 ERLIN1O75477 346 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CBWD6Q4V339 395 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CBWD3Q5JTY5 395 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CBWD5Q5RIA9 395 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CYP4F22Q6NT55 531 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 GOLPH3Q9H4A6 298 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CHORDC1Q9UHD1 332 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 PLAGL2Q9UPG8 496 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 BZW2Q9Y6E2 419 aaKnown RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 KCNK3O14649 394 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 EVI5O60447 810 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 PTK2Q05397 1052 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 APEX2Q9UBZ4 518 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CEP83Q9Y592 693 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 A0A087WZ62 844 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 LDHAP00338 332 aaKnown RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 FKBP1BP68106 108 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 CKAP4Q07065 602 aaKnown RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 LAMTOR4Q0VGL1 99 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 KCNMA1Q12791 1236 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 FMNL3Q8IVF7 1028 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 TMEM161BQ8NDZ6 487 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 ANKRD36BP1Q96IX9 119 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 FDXACB1Q9BRP7 624 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 SIK3Q9Y2K2 1263 aa16.98■□□□□ 0.31
CPSF1-213ENST00000620219 POLR2AP24928 1970 aaKnown RBP16.98■□□□□ 0.31
CPSF1-213ENST00000620219 GSTTP1A0A1W2PQM5 241 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 POLR3GO15318 223 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-213ENST00000620219 RPS6KA1Q15418 735 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 TMEM63BQ5T3F8 832 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 TMEM270Q6UE05 265 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 ZSWIM2Q8NEG5 633 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 MKNK1Q9BUB5 465 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 ABHD16BQ9H3Z7 469 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 ZNF185O15231 689 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 TBC1D8O95759 1140 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 GLRA2P23416 452 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 EFNA5P52803 228 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 SREBF2Q12772 1141 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 DRP2Q13474 957 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 NFASCO94856 1347 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 THAP12O43422 761 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 YARSP54577 528 aaKnown RBP16.97■□□□□ 0.31
CPSF1-213ENST00000620219 RUFY1Q96T51 708 aa16.97■□□□□ 0.31
CPSF1-213ENST00000620219 RCCD1A6NED2 376 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 TRPA1O75762 1119 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 LGALS2P05162 132 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 PSMC4P43686 418 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 MESDQ14696 234 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 PLCB4Q15147 1175 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 NAA35Q5VZE5 725 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 MFSD14CQ5VZR4 134 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 C17orf75Q9HAS0 396 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 SMARCAL1Q9NZC9 954 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 EIF3CLB5ME19 914 aaKnown RBP16.96■□□□□ 0.31
CPSF1-213ENST00000620219 CYP2C9P11712 490 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 NAMPTP43490 491 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 LACTBP83111 547 aaPredicted RBP16.96■□□□□ 0.31
CPSF1-213ENST00000620219 CCDC50Q8IVM0 306 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 TAS1R2Q8TE23 839 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 EIF3CQ99613 913 aaKnown RBP16.96■□□□□ 0.31
CPSF1-213ENST00000620219 C2orf40Q9H1Z8 148 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 LDLRAD1Q5T700 205 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 KLHL7Q8IXQ5 586 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 RNF19AQ9NV58 838 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 UBE4BO95155 1302 aa16.96■□□□□ 0.31
CPSF1-213ENST00000620219 A0A087X0T9 212 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms