RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KCNQ5Q9NR82 932 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 DLGAP2Q9P1A6 1054 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 IRS2Q9Y4H2 1338 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 YDJCA8MPS7 323 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 USP17L12C9JPN9 530 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 USP17L21D6R901 530 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 SMIM22K7EJ46 135 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 CETN3O15182 167 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 NVLO15381 856 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 HNRNPCL1O60812 293 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 DCTN3O75935 186 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 GGPS1O95749 300 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 AFPP02771 609 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 KCNH2Q12809 1159 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 COASYQ13057 564 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 KRT79Q5XKE5 535 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 CIAPIN1Q6FI81 312 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 CYFIP1Q7L576 1253 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 ECHDC2Q86YB7 292 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 ZC3H3Q8IXZ2 948 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 ARHGAP18Q8N392 663 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 PNMA1Q8ND90 353 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 FAM13CQ8NE31 585 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 GLG1Q92896 1179 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 IFT43Q96FT9 208 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 PNMA5Q96PV4 448 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 NKIRAS1Q9NYS0 192 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 SEC63Q9UGP8 760 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 DBR1Q9UK59 544 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 ZMYND8Q9ULU4 1186 aaPredicted RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 USP17L3A6NCW0 530 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 USP17L4A6NCW7 530 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 EIF4E1BA6NMX2 242 aaKnown RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 FZD9O00144 591 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 TMEM253P0C7T8 217 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 SETSIPP0DME0 302 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 FGFR4P22455 802 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 VHLP40337 213 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 TUBP50607 506 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 POLGP54098 1239 aaPredicted RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 YARSP54577 528 aaKnown RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 OR52E8Q6IFG1 317 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 VSTM1Q6UX27 236 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 MAEAQ7L5Y9 396 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 USP17L1Q7RTZ2 530 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 MAIP1Q8WWC4 291 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 FAM136AQ96C01 138 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 DMAP1Q9NPF5 467 aaPredicted RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 ATP8A2Q9NTI2 1148 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 ARPP21Q9UBL0 812 aaPredicted RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 ABCF2Q9UG63 623 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 ARMCX3Q9UH62 379 aaPredicted RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 NR2E1Q9Y466 385 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 COL1A1P02452 1464 aaPredicted RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 A0A1B0GUL6 1792 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 MIF4GDA9UHW6 222 aaKnown RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 MAPK13O15264 365 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 TTLL1O95922 423 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 IL1R1P14778 569 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 TXKP42681 527 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 PTGIRP43119 386 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 RPL21P46778 160 aaKnown RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 POLE2P56282 527 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 CXCL9Q07325 125 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 TNIP1Q15025 636 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 CALCRLQ16602 461 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 EXOC3L4Q17RC7 722 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 FAM47AQ5JRC9 791 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 FRMD5Q7Z6J6 570 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 CTNNBL1Q8WYA6 563 aaPredicted RBP11.6□□□□□ -0.55
UPF3A-212ENST00000619079 LRRC37BQ96QE4 947 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 KCNK9Q9NPC2 374 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 USP20Q9Y2K6 914 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 USH1CQ9Y6N9 552 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 COL4A5P29400 1685 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 ZNF541Q9H0D2 1346 aa11.6□□□□□ -0.55
UPF3A-212ENST00000619079 TRAFD1O14545 582 aaPredicted RBP11.59□□□□□ -0.55
UPF3A-212ENST00000619079 CREB3O43889 395 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 RFC5P40937 340 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 PSMC4P43686 418 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 GALCP54803 685 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 NAPAP54920 295 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 OCRLQ01968 901 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 CALCOCO2Q13137 446 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 TMEM119Q4V9L6 283 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 DCAF12L1Q5VU92 463 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 CCDC65Q8IXS2 484 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 LRRC8CQ8TDW0 803 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ZNF526Q8TF50 670 aaPredicted RBP11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ART4Q93070 314 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ZNF333Q96JL9 665 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 CCDC28BQ9BUN5 200 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 DDX23Q9BUQ8 820 aaKnown RBP11.59□□□□□ -0.55
UPF3A-212ENST00000619079 TIPINQ9BVW5 301 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 PITPNM3Q9BZ71 974 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 VCX3BQ9H321 246 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 PIDD1Q9HB75 910 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 VCX3AQ9NNX9 186 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 PDP2Q9P2J9 529 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 HDAC9Q9UKV0 1011 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms