RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ABHD14A-ACY1A0A1B0GW23 586 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 FGBP02675 491 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 ACTN1P12814 892 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 TIE1P35590 1138 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 KCNA1Q09470 495 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 IKBKEQ14164 716 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 NOTUMQ6P988 496 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 ZPBP2Q6X784 338 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 RBM43Q6ZSC3 357 aaKnown RBP21.64■■□□□ 1.05
UPF3A-211ENST00000618700 STXBP4Q6ZWJ1 553 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 RTN4RL1Q86UN2 441 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-211ENST00000618700 SCFD1Q8WVM8 642 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 ACO2Q99798 780 aaKnown RBP21.64■■□□□ 1.05
UPF3A-211ENST00000618700 TARS2Q9BW92 718 aaKnown RBP21.64■■□□□ 1.05
UPF3A-211ENST00000618700 TRAIPQ9BWF2 469 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 PRO3102Q9H379 93 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 PDZD7Q9H5P4 517 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 MAN1B1Q9UKM7 699 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 COLQQ9Y215 455 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-211ENST00000618700 GDAQ9Y2T3 454 aa21.64■■□□□ 1.05
UPF3A-211ENST00000618700 ZMYM2Q9UBW7 1377 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 A0A1B0GUA9 196 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-211ENST00000618700 ATMINO43313 823 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-211ENST00000618700 EFCAB14O75071 495 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 PROZP22891 400 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 HOXD13P35453 343 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 NCBP1Q09161 790 aaKnown RBP21.63■■□□□ 1.05
UPF3A-211ENST00000618700 UBXN11Q5T124 520 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 CCDC183Q5T5S1 534 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 ATF7IP2Q5U623 682 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 RASIP1Q5U651 963 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 OTOP2Q7RTS6 562 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 ZNF507Q8TCN5 953 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 HERVK_113Q902F9 699 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 RNF25Q96BH1 459 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-211ENST00000618700 ACCSQ96QU6 501 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 ADAM2Q99965 735 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 RGS18Q9NS28 235 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 TMEM63CQ9P1W3 806 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 TNFSF13BQ9Y275 285 aa21.63■■□□□ 1.05
UPF3A-211ENST00000618700 ABLIM1O14639 778 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 N4BP3O15049 544 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 PRPF6O94906 941 aaKnown RBP21.62■■□□□ 1.05
UPF3A-211ENST00000618700 ZSCAN20P17040 1043 aaPredicted RBP21.62■■□□□ 1.05
UPF3A-211ENST00000618700 BMP8BP34820 402 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 COBLL1Q53SF7 1204 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 ZNF658Q5TYW1 1059 aaPredicted RBP21.62■■□□□ 1.05
UPF3A-211ENST00000618700 EEF1DP3Q658K8 133 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 ASTLQ6HA08 431 aaPredicted RBP21.62■■□□□ 1.05
UPF3A-211ENST00000618700 SLC39A4Q6P5W5 647 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 GTPBP4Q9BZE4 634 aaKnown RBP21.62■■□□□ 1.05
UPF3A-211ENST00000618700 PTPRHQ9HD43 1115 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 C1orf112Q9NSG2 853 aa21.62■■□□□ 1.05
UPF3A-211ENST00000618700 RANBP2P49792 3224 aaKnown RBP21.61■■□□□ 1.05
UPF3A-211ENST00000618700 C9IYK1 514 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 ENPP3O14638 875 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 HNRNPDLO14979 420 aaKnown RBP21.61■■□□□ 1.05
UPF3A-211ENST00000618700 BMP6P22004 513 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 WDR5P61964 334 aaKnown RBP21.61■■□□□ 1.05
UPF3A-211ENST00000618700 MORC3Q14149 939 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 C9orf50Q5SZB4 431 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 TWF2Q6IBS0 349 aaKnown RBP21.61■■□□□ 1.05
UPF3A-211ENST00000618700 SLC27A1Q6PCB7 646 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 TRIML1Q8N9V2 468 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 IKZF4Q9H2S9 585 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 TMEM206Q9H813 350 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 EXOC7Q9UPT5 735 aa21.61■■□□□ 1.05
UPF3A-211ENST00000618700 BIN1O00499 593 aa21.6■■□□□ 1.05
UPF3A-211ENST00000618700 TOM1L1O75674 476 aa21.6■■□□□ 1.05
UPF3A-211ENST00000618700 CAVIN1Q6NZI2 390 aaKnown RBP21.6■■□□□ 1.05
UPF3A-211ENST00000618700 SLC24A5Q71RS6 500 aa21.6■■□□□ 1.05
UPF3A-211ENST00000618700 CDR2LQ86X02 465 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-211ENST00000618700 SMYD4Q8IYR2 804 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-211ENST00000618700 BICD1Q96G01 975 aa21.6■■□□□ 1.05
UPF3A-211ENST00000618700 EIF2AQ9BY44 585 aaKnown RBP21.6■■□□□ 1.05
UPF3A-211ENST00000618700 UBE2OQ9C0C9 1292 aaKnown RBP21.6■■□□□ 1.05
UPF3A-211ENST00000618700 CXXC1Q9P0U4 656 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-211ENST00000618700 A0A0U1RQF3 1178 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 LIG4P49917 911 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 FAM189BP81408 668 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 MCL1Q07820 350 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 TMEM132AQ24JP5 1023 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 SKOR2Q2VWA4 1001 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-211ENST00000618700 MPZL3Q6UWV2 235 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.59■■□□□ 1.05
UPF3A-211ENST00000618700 NELFCDQ8IXH7 590 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 MYOCDQ8IZQ8 938 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 CRIPAKQ8N1N5 446 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 GUF1Q8N442 669 aaKnown RBP21.59■■□□□ 1.05
UPF3A-211ENST00000618700 CDT1Q9H211 546 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 FAM105AQ9NUU6 356 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 STYXL1Q9Y6J8 313 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 PTPRSQ13332 1948 aa21.59■■□□□ 1.05
UPF3A-211ENST00000618700 TTC3P53804 2025 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 TISP43B9A030 160 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 ANKRD63C9JTQ0 380 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 ATF7P17544 494 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-211ENST00000618700 RAB27AP51159 221 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 DEFB103AP81534 67 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms