RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 EXOC7Q9UPT5 735 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 ARL2BPQ9Y2Y0 163 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 MYH6P13533 1939 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 PPEF1O14829 653 aaPredicted RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 HNRNPDLO14979 420 aaKnown RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 SLC12A3P55017 1021 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 PPFIBP2Q8ND30 876 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 ZSWIM1Q9BR11 485 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 IMPG2Q9BZV3 1241 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 DISP2A7MBM2 1401 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 FOXO6A8MYZ6 492 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 FAM86B1E9PN63 330 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 PPP1R11O60927 126 aaPredicted RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 SGPL1O95470 568 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 NDUFB10O96000 172 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 FAM86B2P0C5J1 330 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 PRELPP51888 382 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 PPP1R21Q6ZMI0 780 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 SLC13A5Q86YT5 568 aaPredicted RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 C3orf20Q8ND61 904 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 WDR11Q9BZH6 1224 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 WNT8AQ9H1J5 351 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 CDC42EP4Q9H3Q1 356 aaKnown RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 DDX4Q9NQI0 724 aaKnown RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 PYGMP11217 842 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 FNTAP49354 379 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 RASSF2P50749 326 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 STAT2P52630 851 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 KCNJ2P63252 427 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 LMBRD2Q68DH5 695 aaPredicted RBP13.47□□□□□ -0.25
LIG1-221ENST00000613670 C4orf33Q8N1A6 199 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 CCHCR1Q8TD31 782 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 C11orf70Q9BRQ4 267 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 ALG13Q9NP73 1137 aaKnown RBP13.47□□□□□ -0.25
LIG1-221ENST00000613670 CTNNAL1Q9UBT7 734 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 AJAP1Q9UKB5 411 aaPredicted RBP13.47□□□□□ -0.25
LIG1-221ENST00000613670 C4AP0C0L4 1744 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 C4BP0C0L5 1744 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 EML1O00423 815 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 TROVE2P10155 538 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIG1-221ENST00000613670 ANXA13P27216 316 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 PALB2Q86YC2 1186 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 LRRC57Q8N9N7 239 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 ERP27Q96DN0 273 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 LRRC37BQ96QE4 947 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 TXLNGQ9NUQ3 528 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 SLC12A6Q9UHW9 1150 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 TISP43B9A030 160 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 PI4K2BG5E9Z4 385 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 RTN2O75298 545 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 NQO1P15559 274 aaKnown RBP13.47□□□□□ -0.25
LIG1-221ENST00000613670 CRKP46108 304 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 DNAJC3Q13217 504 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 C6orf163Q5TEZ5 329 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 CAPRIN2Q6IMN6 1127 aaKnown RBP13.47□□□□□ -0.25
LIG1-221ENST00000613670 CDC42EP5Q6NZY7 148 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 PTF1AQ7RTS3 328 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 CTAGE3PQ8IX95 158 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 SLC17A8Q8NDX2 589 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.47□□□□□ -0.25
LIG1-221ENST00000613670 KAT5Q92993 513 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 TDRD3Q9H7E2 651 aaKnown RBP13.47□□□□□ -0.25
LIG1-221ENST00000613670 TMEM206Q9H813 350 aa13.47□□□□□ -0.25
LIG1-221ENST00000613670 SGK1O00141 431 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 CES2O00748 559 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 ITGA8P53708 1063 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 RAD23BP54727 409 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 ACCSLQ4AC99 568 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 PRR5LQ6MZQ0 368 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 COL23A1Q86Y22 540 aaPredicted RBP13.46□□□□□ -0.25
LIG1-221ENST00000613670 ATP8B4Q8TF62 1192 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 DCAF4Q8WV16 495 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 RAB20Q9NX57 234 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 MYO3BQ8WXR4 1341 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 IGSF9BQ9UPX0 1349 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 A0A0A6YYK5 440 aaPredicted RBP13.46□□□□□ -0.25
LIG1-221ENST00000613670 KIAA0391O15091 583 aaKnown RBP13.46□□□□□ -0.25
LIG1-221ENST00000613670 KIF1CO43896 1103 aaKnown RBP13.46□□□□□ -0.25
LIG1-221ENST00000613670 SMIM24O75264 130 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 PRKCIP41743 596 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 RHBDL3P58872 404 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 IZUMO3Q5VZ72 239 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 POLLQ9UGP5 575 aa13.46□□□□□ -0.25
LIG1-221ENST00000613670 MRPL11Q9Y3B7 192 aaKnown RBP13.46□□□□□ -0.25
LIG1-221ENST00000613670 A0A0G2JND7 137 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 IPO5O00410 1097 aaKnown RBP13.46□□□□□ -0.26
LIG1-221ENST00000613670 RARGP13631 454 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 PLS3P13797 630 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 ATP2A2P16615 1042 aaKnown RBP13.46□□□□□ -0.26
LIG1-221ENST00000613670 CD58P19256 250 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 MSH2P43246 934 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 PALM2Q8IXS6 379 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 SUPT20HQ8NEM7 779 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 CHURC1Q8WUH1 139 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 CPA5Q8WXQ8 436 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 SNF8Q96H20 258 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 HES6Q96HZ4 224 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 CBWD1Q9BRT8 395 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 MYH13Q9UKX3 1938 aa13.46□□□□□ -0.26
LIG1-221ENST00000613670 RIPK2O43353 540 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms